Gene detail

Detailed information of XP_081302953.1 in Orbicella franksi

Genomic Location: NC_138156.1:11195928...11211121
NR annotation: XP_027059273.1, microcephalin-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081302953

ATGGAACGGAAGAAAGTCTCGCTGAGTCTGAAAACGGGCACTTCGAGGAACAGATCGAAGGAACCATCAACAGCACGTAGATGCATCACTCCCAAAGGCACAAGCGAAAAGAAGGGCATTTTAAAGGAAGGCATATCAAACAAACCTAATCTTCCTGGGTCACCGCTATCAAAAAGTGGAAGTTATCTGAATACTCTGGAGAAATCAAAGTTCCAAAATGATGGCTTGGACTTTCACTGCTCGTTTGAAACTGACGGAAGCTCTGAGCAGGATATTGACATTCCCTGCACCCAACCAGTATCACACGACAAGATACTTGAAGGTGTTGTTGCATTCATTGAGGCACGTTCCAACACTGAAAACAGATTTGAAGGAATCTCAAAACAGATGGAAATGCTGGGAGCAACAGTGCTCAAGAAATTCACCCCAGAGGTTACACATGTGATCTTTAAGGATGGCAAAAAGACAACGCGGGATAAGGCGATAAAGAAGGGTATCCACCTGGTGTCAGTACTTTGGGTGGAGAGCTGTCGGCAGAGCGGAAAACATGTATCTGAAGACCTTTTCCCAGTTGTTGAACCAGAGCAGGCTGTTACACCACTTATGGTTGGACGGCTCAAGAGGACAAAATCCATGCAGCCTAAAGCTTTTGAGGAGGATGTTCAAAACAGTGCAGACAGGGGAGACAGAAGGAGAAAACGGAAACTACTAGCCGAGAATTTAACTCCAACAGCCATGGTTTTCTGTGCAGAAACTCAAGATCCATACAGCCCAATTGCCGTCAATCCTCCGCTTACTCCGCATATGGTACCAGACACTCCCTGTCATGAAATACCTTCTCCTTTAACCAAAACACTTAGTTATGGTGGAGACTCTCCAAAAGAACCAATTGAATCTGACTGCAAAGAAACTGACCAATCACCAGACAGCAACCAAGATGTCCCATCAAGCATCAATAAACTGAAAAAAAGGCTCCTGAAGTGCACACCATCCCGATTACCCACCCCACCCGCGGAACAAAAGAAGACGCCAGCAGCTCAGATAAGAAAAACGCCTACGGATGTACTGCTCACAGGTTCTGAACAAGGCAAGAAAAGGAAGAGACAAGACTCCACAAAGGAATTACAAAATGGCGATGTCAAGGAGGCTGTTCCGAAGCAGAAAAAGAAAGCAAAACTTGGAGGGCAAGTACTGAATGATTCTAACGACACCGGTGAGTCAAACACAAAGCAAAGCGCAGAAAACACACTGGTAACGAAAAAGGATGGAAGGAGCACGACAACGCAGAATTCAGGAATGCGTATAAAGGACACGGAAAGCACCACAGGACACCCCGTTGGAAGTAAAAGCCAACTGAAAGTTTCAGAAAAGAAGAAACCGCAGGTTAAGGCAATGAAGAAACTCCCAGCAGAGAACAAAACTGGGTTGGATTCAGACTCAGGTGTTTCCATAACAGATGAAAGCAATAACCCTTCTATCGCATGTAATGGAAAGAAAAAGTTCTCAAAAACGGCAAAGTTGTTAAGCCAGGTGGGGCAAACGGTAGAAGAGCTCGAGGATTCTGTCGCAGCGGAAGAAAGTGGAACTAAACGTGAAGAAAAAAGCGCTGCAATTAAAGAAGTTGTAGTGAAAAAGAAGCAGAATTTACAACGGGAAAAACTGGTCAATCAGGTTAAACTAGACAGTCAGGAAAAACCGGTGAATCGGGTTCATCATTGTGAAGATAAGGAGGAAGGTGAGGCCATTATGAAGAGCAGTGCTGTGAACGGAAATGGAGGAAAACGAAATGTCGCGAGGAGTGTGAGAATAACCAGTGAAGAAGGTCGATCTGAGGACGATGATGCTGATGTAGAAGAGGAGACATGTACAGAGGAAGATGTACAACGATCCCACGAGGAAAATAAGCCGAGAGCTGAAAGAAAACAGCGAACCAAGCTTGTGAAAAAAGTCAGGCCCAAACGATCGGTAGTTATGACAAGTATGCATTTTGGTGAGCAGGATATCGTTCTATCCGTTGTCCGCAAGTTGGGAGGATTTTTCATCGAAGATCGAGTCTCGTCCTCCACTAGTCACGTGATCGCTGGAAGTCCTCGCCGAACGTTGAACGTCCTAATGGCCATTGCTCAAGGATGCTGGCTTGTATCGCCTATGTGGATGATGAAATCTCTAGAGGTCGGTTACTGGGTGGATGAAGAGCCCTACGAATTATCGGACGCATTTCCTGCAGCACAGCTTTGCCGTCTTGAACGTGTTAGCGCTGGGCCAGGTTACCACCAGGAGCTGTTTGTGGAGTGTCCACCGATATTTGTCTCCGAGAATTGCTCCCCTCCAAGCGACTCACTGATGTCCTTGATAAACCTTTGTGGTGGAAAGGTTAGTACCTCTGTGAGAAAGGCAGGAATATGCATTGGTTCAATGACAAGAAGAACACAAGCGGTTAATATCACGGAACAGTGGCTTCTCGATTGTATAACCCAGCACGATGTTGTGCCTTATACCAATTACGCACTCAATTCCCCGGCGAAGCGAAGACGAGAAACAAGTCCCAGCTACTGA

Transcript

Protein

Uniprot

Uniprot term	Description
P61593	Microcephalin OS=Pan troglodytes OX=9598 GN=MCPH1 PE=3 SV=1
P61591	Microcephalin OS=Gorilla gorilla gorilla OX=9595 GN=MCPH1 PE=3 SV=1
P61592	Microcephalin OS=Hylobates lar OX=9580 GN=MCPH1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF12738	PTCB-BRCT	twin BRCT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357	Domain	BRCT domain	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR022047	Family	Microcephalin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14625	MICROCEPHALIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000278	Biological Process	mitotic cell cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19403	MCPH1; microcephalin	-	Chromosome and associated proteins	ko03036	deepkoala