Gene detail

Detailed information of XP_081303343.1 in Orbicella franksi

Genomic Location: NC_138156.1:7067474...7096591
NR annotation: XP_027049169.1, heterogeneous nuclear ribonucleoprotein L-like isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081303343

ATGGCTGACATTGGCGGTATGATAGCCGCCACAGGCATCGAAAGCCCGAACAAACGGGCGAAAATGGATAGCGGACTGACAGCAACAAACTTCGATGAATCAAAATTTGCCAGATATTACAGAACAGACGCAGCCAGCTCTCCCACAAGCTCGCATTCCGCACCAGTTGTCAGTGATACATCAGCATATTATTCATACCCGTACACGTTCGCGAATTCTTTCTCTTCGTATTCGTATCCTTGTGGACAGCAGACGGACGCAGCAGCTTTGTACACATACCCCGCATCTTATGGCGTTCCCTACAGCACACTGAATGGCTTCAGCACGGAATATTCGCCATCCTCAGGTTATTCATTATCTCCCAGTTCTTCAGTTTCTACGTTGGCATCAAACTCAAGCCTCACTCTTCCACAGTCATTATCTCTAAATTCTACAGCACATCACAATACGCCTCCTTCACGTGTCATTCACTGTCGAGCAGTTGCAGATGGTTGTAAAGAAACAGACTTAATAAACGTTCTTCAGCCTTTCGGGAAAATTACATATGTGACATTATTGCCAAAAATTAGACAAGCACTGGTGGAATTTGAAGATATTGAATCTGCCATAGCTCTAGTATCATTCTCACAGTCAAATACACTCACTGTTCTCGGTAGACAAATGTTCGTGAATTACTCAAAAAGTCAAGAAATAAAAAGGGATAAAGTTCTTAATGGTGACAGTAATGGAGCTTGTTCTGAAGCTAGTAATATTCTCCTTCTTACAATAATCAATCCTTTACATCCAATCACAGTGAAAGTGCTTCATAAAATATGTAGCCCCCATGGGAAGGTGTTGAGAATTGTGATTTTTCACAAAAACGGATTACAAGCTTTGGTTGAATTTGACAATGTCGAAGCAGCACAGCGAGCTCTTGCAACACTCAATGGACAAGATATATACGCTGGATGCTGTACTTTGAAGATTGACTATTCAAAGAAAGCGAAAAAGTTAAATGTTTTTAAAAATGATGATGAAACATGGGATTACACTGGAGCACTTAGCAACAACTCAGGGATTCCAAGTAAGACAGCTCTTTTGGGTTCTGGCCTTTTGTCTGCAATATCAGGAAATGATGCAAGTGAATCACAGTTGTCAAGCTCACCACCTAACAACATTTCCCTAAATGGAAATATGAATGTGAACGGATCATCAATTCCCATCAGTAATGAGGCCATTGCAAGAGCAGCACAGTTTCCTACAGTGCAGAGTATTCTAGCTAAGGTTGCATCTCTCCATGGTAACCCACCAAAGAGTCCAACATCAGGTAGTAGCTCTCCAGTGGAGAATGTTGTCAAAAAACTTGGTATTCTGGGAAGCTCACCCTACCAGCTGCCGCAGAGTGGACTGTTAGGTGCCTTACCTGGGCTGTCTCAGCAACAACAGCAGATGAATGGCATTTCCCATGCTCTGAATGCAGGGGGCACCGGTTGTGTGTTGATGGTTTATGGGCTGAATGCAGAGAAGATGAACTGTGATAGGATTTTCAACTTGTTTTGCCTGTATGGTAACGTTGTCAAGGTCAAGTTCCTCACAAACAAGCTTGGCGCTGCCATGGTACAAATGTCAGATAAAGTGGCTTCTGAGATGATCATCAGGAACTTGAGTGGCGCCATTCTCTTCGATTCCAAGATTAACATCATGTTTTCCAAGCACCCGTTCATAGCAGATTCCTCGGTAGTCACAGCTTTACCCGATGGCTCGCCGTCGTCTATGAACTTTGCTGACAACAGAAACAACCGCTTCAAGTATCTTCCAGAAGGTCAAAGTCTCAAGAACAGATACCAACCGCCAACAAGAATGCTTCATTTCTTTAATGCTCCGCCAAACTGCACTGTGGAAACACTCAAGGAGGTCTTTATTGCAGCTGGATCTTTGTCTCCTCTTAAAGGAACGTTCTTTTCAAAAGCCAATGCCAAGTCATCAGCAGGATTACTTGAGATGCCAGACATTCGTTCAGCTATGGAGGCGCTTACACTCACAAATCACTTTACCATCAACCCGCCAGGAGGAGGTTCCTATACCCTGAAGCTAGCCTTCTCCCCAAGCTCCTCAATATCTCCTACGGCTCCAACCGTTGCTCCCGCTGTTGCCGCAGCAGCGGTTGCCGTCAGCAATGGTGCCAATCCTTTGGGTCCCATTGGCTCCCCTGTGCACCCAAGATGCATGGCGGGAAGTCCTATCAGTATTGTGACCAACGGCGTCAAGGAATTGAACGGCGACGCGGAAAGGAATGGGCTGAGTCCGGAGCACCTGACTGGTTCCAGTCCCTAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q8R081	Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus OX=10090 GN=Hnrnpl PE=1 SV=2
P14866	Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL PE=1 SV=2
F1LQ48	Heterogeneous nuclear ribonucleoprotein L OS=Rattus norvegicus OX=10116 GN=Hnrnpl PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11835	RRM_8	RRM-like domain	Domain	Interproscan
PF13893	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006536	Family	HnRNP-L/PTB	Interproscan
IPR021790	Domain	PTBP1-like, RNA recognition motif 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15592	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0043484	Biological Process	regulation of RNA splicing	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13159	HNRNPL; heterogeneous nuclear ribonucleoprotein L	-	Spliceosome	ko03041	deepkoala