Gene detail

Detailed information of XP_081305481.1 in Orbicella franksi

Genomic Location: NC_138157.1:12923293...12944606
NR annotation: XP_020611155.1, probable ATP-dependent RNA helicase DDX27 isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081305481

ATGGCGTCTGTTCCATTCGTTGGAACTCTAGAATCAGATGACGATGTAGACCAGTTAGATAATGAAAGTGATAGCGACGAAGAACCAAAGAAGCCTGTCAAAAGAGCGAAAACCAAGAAGAGCTCATGCGGATCGCCGTTTGAGGACGACTTTCAGTTCTTCTCAGTAGAATTGGAGGATAATTTTCAAGATCCATGGAATCTCGACGTTGCTATTAAGTTTGCAAAGCAGAAACAAGAGTCGAATCTTAATTCATCAAGTCTTCAGGATAAAATAGCAAAGAGAAGAGAAACAAGGCGGAAGAAAAAATCTAACAAGGTAAATGAACAGAATATAGCTGAAGCTGAAGAAGACAAAAGTTGTGAGACTGAGGAGAAACATGAAGAGCTGGACTCAGTCAAAGAAAATGGAGAGGAGAGCATTGGTACAGCAAATACTATCTTGCCTTGTGATGAAGAGGAAAGCAGCTCTGAAGATGATCAAGTTATTGATAAGATTTTTAGGTCTGGAAAGGTCAACTTATACATGGGAAAATATGGTACTCCAGTTTCACCTTGTTCAGAAACTACCAGCTGTCTTTTTAAAACGTCAACATCAAACCAGCAGACAATAGCAAACAGAACAAATCTGATAACTGAAAAGAAAAGGAAATTTTTTGAAGAACCTCCTCCACAAGTGATGCATCAAACTTTTACAACTATGAATTTATCAAGACCTTTACTCAAGGCTATAAATGATCTGGGATTTAGTCATCCTACGCCTATCCAGGCCTCAACTATTCCTGTGGCTCTGATGGGCAAAGACATCTGTGCATGTGCTGCAACAGGAACAGGAAAGACAGCAGCATATATGCTTCCGATATTGGAGCGACTTATTTACCGACCTCAGCAGGCGTCAGTAACAAGGGTCCTCATTCTAACTCCCACAAGAGAGCTGGCCATTCAGATTCATTCTGTAACCAAAGCATTGTCCAAACACACCAACATCCAAGTGTGCCTGGCTACAGGGGGCTTGGATGGGAAGAGCCAGGAAGCAGCATTACGTAAAGGACCTGACATCGTGATTGCTACTCCTGGGAGACTTGTGGATCACTTGCATAACACTCCGTCATTTAACCTGCAAACCGTGGAGATAATAGTGCTGGATGAAGCTGACAGAATGCTAGATGAAAACTTTAAAGACCAGATGGAGGAAATTATGAAGCTCAGTCCACGTGGAAGGCAGACAATGCTATTCTCAGCAACAATGACAGATGAGGTTGAAGAACTTGTCAGTCTTTCATTGAATCAGCCCGTGCGCCTGTTTGTTGACAATAATACCGACGTCGCTCATAACTTGCGCCAGGAGTTTGTAAGGATCAGGAGTAACAGAGAAGAAGATCGCTTAGCTATTATCACAGCACTATGCAGTAGAACGTTCAACGAACATTGCCTGATATTTTTGCAAACTAAAGCGTCAGCTCACAGACTGAGAATAATCTTAGGGCTGCTGGGATTGAACGTGGAAGAGCTCCATGGAAACTTGACACAATTACAGAGGCTGGAAGCTTTAAGGAAATTCAAGGCCGGCGAAGTTGACATTCTTGTAGCTACGGACTTAGCATCTAGAGGACTGGATATTTTAGGAGTGAAAACGGTCATTAACGCCAACCTTCCGCCGACGCTGAAGCAGTATATTCACAGAGTTGGAAGAACAGCTCGGGCGGGACGCAGTGGAAGATCTGTTTCGCTAGTCGGAGAAAAAGAAAGAAAACTGCTGAAGGAAATTGTAAAATTAGCCAAGACACCAGTGAAAAGTAGAATAGTCCCTACAGAGGTGATTGAGAAATATAAAAGTAAGATTCAAGGACTCGAGAAGGACTTGAAGGAAATTTTGAAACAAGAAAGCGAAGAAAAAGAGCTGAGAATCTCTGAGATGGAGATGAATAAAGCACGGAACCTTATTGAACACGAAGAAGAGATCTTCTCCAGGCCTCCGCGGGTGTGGTTTCAAAGCAAGGCAGACCTAAAAAGAAAGTCTGACAAAGCAGCAAACGGACCAGCCAGCAAGAAATCCAAAAATGAAAACAAGAAAGGAAAGATCGCAGCCAGCGCAAATGAAAACGAAGAGGATAAGAAGAAGCGAAAAGAGATGGAATTCATCGCACGAGAGGTCAAGCGGTCGAAAAAAAAGAAACGCTTGCACGCCTTCCCGCCGGACAAACCCGATTTCAACTCAAAAGGAAAATCATCAAAAACGAAGAGTGCTGCCGCTGCTGGTGGTTCACGGCTCAAGGCATTTGACAAAGAACTCACGGATACAAGCAAAAAAGCGCTAAAAACCTTCAGACAAAGCTCAAGACCCGATGATTCAAAGAAGTTCAAGAAAAGTCCAGGAAGGTTTAAATCAAAGAAAAGATACAAGAGAAGATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q96GQ7	Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens OX=9606 GN=DDX27 PE=1 SV=3
A1A4H6	Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus OX=9913 GN=DDX27 PE=2 SV=1
Q921N6	Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus OX=10090 GN=Ddx27 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13181	DDX27, DRS1; ATP-dependent RNA helicase DDX27	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala