Gene detail

Detailed information of XP_081306701.1 in Orbicella franksi

Genomic Location: NC_138158.1:18160421...18167452
NR annotation: XP_020627231.1, U2 small nuclear ribonucleoprotein A'-like [Orbicella faveolata]
Species abbreviation OFRAN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09661	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=2
Q4R8Y8	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 PE=2 SV=1
P57784	U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005199 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14580 all species →	LRR_9	Leucine-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003603 all species →	Domain	U2A'/phosphoprotein 32 family A, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10552 all species →	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0030620 all species →	Molecular Function	U2 snRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11092	SNRPA1; U2 small nuclear ribonucleoprotein A'	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.