Gene detail

Detailed information of XP_081307663.1 in Orbicella franksi

Genomic Location: NC_138158.1:2199173...2220810
NR annotation: XP_020617722.1, low-density lipoprotein receptor-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081307663

ATGGCAAGATTCAGAGGGGCTTTGTTTGGGATTTTGATCTGTCTGCTGGCCGCTTTGGATTTTTTTCAAACAATAGCGTTTCGTTGCGGTGAAGATCAGTTTGTCTGCGCGAATCTCACATGCATACCAGAAAATTGGCGATGTGATGGTGATGATGACTGTGGAGATAACTCCGATGAGCAAAACTGTCCTGTTACAAAGTGTGATCTTTCGAGCAATTTCCAGTGCAGAACTGTTGATCGTTGCATTCCTCTTAGATGGGTTTGTGATTATGACAATGATTGTGGTGACAATTCTGATGAGCCCCCGAATTGTGCCCAAAGAACTTGTTCAGACAATGAACATGCATGTGGCAATGGACAGTGTGTTCCAAAACGATGGCTGTGTGATCGTGACAGGGATTGTGAGGATGGTAGTGATGAACAAGGATGTGGAACAATTTCTTCAGGTAACAAGACGTGTAAATCCAATGAGTTTACCTGCGCAAATGGCAAGTGTATCACGCACACATGGCATTGTGATTTTGACAATGACTGCGGTGATAACTCTGATGAAACCCATTGTCCTAACAAAACTTGCAGCCCAACAGAGTTTACCTGTAATAATGGACGGTGTATAAGGAAGGCCTGGCATTGTGATGGTGACAATGACTGCCAAGATAATTCTGATGAGATGGGCTGCTCGAATGGCGTTACCAGATGTAAGCATGCTGAGTTTCAATGTGACGATGGCGGTTGTATCCATCATAGTTGGAAGTGCGATGGAGAAAATGATTGCAAAGATGGCTCAGATGAGAGAGGATGCAATCTTACCTCCTGTGGTACCAGTGACTTTAGTTGCACCAATGGAAGGTGTATCTATTTATATTTGAAGTGCAATGGAAACAATGACTGTTTGGATAACTCTGATGAACGGGATTGTCCTGAACCCACAAAAATTTGTAAAGATGACGAATACCGATGTGGAGATTCACGCCAATGTGTTCCGTACAGTAAAGTTTGTGATAAGCGCTATGACTGTGCTAATAAAATGGATGAGCCCATGTCTTGCGGAATTGATGAATGTATTGATCACAATGGGCATTGCCAACAGTTCTGCAATGACACAAAAACATCTTATGTCTGCTCCTGTCGTGAAGGCTTTGAAATAGACAAGGACGACCACAGAGTTTGTCAAGATGTTGATGAGTGTAAAATCCCTGGAATGTGCAGCCAGTTGTGTTTCAACACAAAAGGAAGCTTTAAATGTTTTTGCCGAGCAGGCTATTTCATGGAACCAGACAAACGCAGCTGTAAAGCAATAGGTGAACCAGGGTATTTGATATTTGCAAACCGTCAAGATATCCGGCGCATCCTGTTTGACTCTTCAGACTATACGGAACTAGTACCAGGACAGCGAGGTGCAATAGCTTTGGATTACGACTTTGAAAGTGGATACATATTCTGGACAGATGTCAGTAATGAAACTATCAATCGTGCCAAGATGGAGGAGAACCCCAAAGTAGATGTTCTGGTTAAAATAGACTTGGATACTCCAGATGGAATTGCAGTTGATTGGGTTAACAAGAAACTGTACTGGACAGACACCGGCACAGACATGATTGAGGTGGCTGATTTCAATGGCACCAATCGTCTTGAACTGATTACGACAGGGCTGGAGGAGCCAAGGGCTATTGTGGTGCATCCTGCTCTTGGCTATATGTTTTGGACTGACTGGGGTGAAACTCCCAAGATTGAAAAGTGTGGAATGAATGGTGATACCAACACAAGGCAGGTTTTGGTCAGCACAAACATCCTCTGGCCCAATGCTCTGGCCGTAGATTACACCATAGACAGAATCTGGTGGGCAGATGCAAAACTTCACACTATTGAGTCATCAGATTTACATGGAAAAAATCGGCGAATCATTCTGAGTGAGAATATCAACCATCCATTTGCCCTGACAATATTTCAGAGCCACATTTACTGGACAGACTGGCATCACAATGCAATCAACAAGGCGAATAAGTTCACTGGCGAAGAGCGATCTGTTGTGATAGAGAATTTGTTTTCACCAATGGACATTCATGTTCATCACCGACAGAGGCAACCAACAGGAGAGAATCCATGCAGTCCCACGTCAGAGCTTGACAGCTGCAGCCATATCTGTTTGTTAGCCCCTAGGGATATTGAGATCTATCAGGATGGCTATTCTTGTCACTGTCCCCCTGGTGTTCAGCTGCTTTATGATCAGAGAACCTGCAATACAACAGATGCTTTTAAGTGCACTGAAAATACTTGCCTTCATGGTGGAACCTGTGTACCTGGAAAAGAGAATGAAAAATTACCCACATGCATATGTTCACAGTATTACACAGGAAGACGCTGTCGAGTAAATCGCAACTTGCCAGTACCTCCAACGCCAACCACTTCTGCAACTAGCGATGGTCTTGGATGGCGACAAGGCCAAGAGGAAGAGGATATTGGTGTGACTGTAGGTATTTCAGTAACAGTTGTGATACTCATCTTAGCCATTGGAGTTCTTGTTGGATGGCTGGTATACAAGAGAATACAAAGAAACAGTCGTAGATCAATGAACTTTGATAACCCTGTGTATAAGAAAACAACGGAATCTACTAGCTCACTGGATAGAATTAGTATACACTTTGGACATTCACATGGAAAGTGTCAGTCATTATTGGTGAGAAGTTATTGTTTGTCTTTAGAAAACAGTCCTAAGAAAATGGGCGCTGATTGGTTAAAAATGGTGCATCTATAA

Transcript

Protein

Uniprot

Uniprot term	Description
P35951	Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2
Q28832	Low-density lipoprotein receptor (Fragment) OS=Sus scrofa OX=9823 GN=LDLR PE=1 SV=2
P35950	Low-density lipoprotein receptor OS=Cricetulus griseus OX=10029 GN=LDLR PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20053	VLDLR; very low-density lipoprotein receptor	-	Membrane trafficking	ko04131	deepkoala