Gene detail

Detailed information of XP_081308036.1 in Orbicella franksi

Genomic Location: NC_138158.1:8925844...8931250
NR annotation: XP_020627208.1, tetratricopeptide repeat protein 28-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081308036

ATGTACAACGTAGACGAAGTTATACAAGTCATCTCGATCGGCCTCATTGTTACAGGCTACCTTCTCAACACTAATCGATTCCTAAAAGCAATCGAATTATGCAAGGAATGCTTGTTCATTCTGAAAGAAAGAGCAGGTATAAAAGACGAGAAACTCACCAAATCATTCTACGTAAAGATATATTTTACAATGTGGAAAGCATGTAGTCTTATCAGTGATACCACAAACGCCATAAAATACGCAGAAAGCCTAGTTAAGCTGAGCTTAGAACTAGCAGAAGTGTATTTCCGTGAAAGTAAATACGCACAAGCAAAAAATCTCTCTGAAAAAGCTCTCCTTATCAGTAAAGAAATTGAAGACAGAAGTGGAGAAGCTTCCTCTTACATAAACCTTGGAGCGATATATATATCAGTTGGCGAATATGAGAAGGCTATAGAACTTCACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGAGGAGAAGCTTCCTGTTACACAAACCTTGGAGTGGTGTATGGATCAATTGGCGAATATGAGAAGGCTAGAGAACTTTACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGAGGAGAAGCTTCCTCTTCCGGAAACCTTGGAGCGGTGTATCGATCAGTTGGCGAATATGAGAAGGCTAGAGAACTTCACGAGAAAACACTTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTATGGAAACCTTGGAGCGATATATATATCAGTTGGCGAATATCAGAAGGCTAGAGAACTTTACAAAACAGCAATTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTACACAAACCTTGGAGAGGTGTATCGATCAGTTGGCGAATATGAGAAGGCTAGAGAACTTCACGAGAAAGCACTGGTGATCCAGAAGGAAATTGGAGACAGAAGAGGAGAAGCTTCGTCTTCCACAAACCTTGGAGTGATATATATATCAGTTGGCGAATATGAGAAGGCTAGAGAACTTCACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTATGGAAACCTTGGAGCGATATATATATCAGTTGGCGAATATCAGAAGGCTAGAGAACTTTACAAAACAGCAATTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTACACAAACCTTGGAGAGGTGTATCGATCAGTTGGCGAATATGAGAAGGCTAGAGAACTTCACGAGAAAGCACTGGTGATCCAGAAGGAAATTGGAGACAGAAGAGGAGAAGCTTCGTCTTCCACAAACCTTGGAGTGATATATATATCAGTTGGCGAATATGAGAAGGCTAGAGAACTTCACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAATCTTTGTCTTACACAAACCTTGGAGTGATATATATATCAGTTGGCAAATATGAGAAGGCTAGAGAACTTCACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCTTCTTACACAAACCCTGGAGTAGTGTATCGATCAGTTGGCGAATATGAGAAGGCTAGAGAACTTTACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTATGGAAACCTTGGAGCGATATATATATCAGTTGGCGAATATCAGAAGGCTAGAGAACTTTACAAAACAGCAATTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTACACAAACCTTGGAGAGGTGTATCGATCAGTTGGCGAATATGAGAAGGCTAGAGAACTTCACGAGAAAGCACTGGTGATCCAGAAGGAAATTGGAGACAGAAGAGAAGAAGCTTCCTCTTACACAAACCTTGGAGCGGTGTATCAATCAATTGGCGAATATGAGAAGGCTAGAGAACTTTACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGAGGAGAAGCTTCCTCTTACGGAAACCTTGGAGCGATAGATCAATCAGTTAGCGAATATCAGAAGGCTAGAGAACTTTACGAGAAAGCACTTGCGATCAAGAAAGAAATTGGAGACAGAAGAGGAGAAGCTTCCTGTTACACAAACCTTGGAGTGGTGTATCAATCAGTTGACGAATATGAGAAGGCTAGAGAACTTCACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTACGCAACCCTTGGAAAGGTGTATGAATCAGTTGGCGAATATGAGAAGGCTAGAGAACTTCACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTACGGAGACCTTGGAGGGGTGTATCGATCAGTTGGCGAATATGAGAAGGCTAGAGCACTTCAGGAGAAAGCACTTGCGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTACACGAACCTTGGAAGGATTTATCGATCAGTTGGCAAATATGAGAAGGCTAGAGAACTTCACGAGAAAGCACTTGTGATCCAGAAAGAAATTGGAGACAGAAGTGGAGAAGCTTCCTCTTACGGAAACCTTGGAGAGGTGTATGGATCAATTGGTAACTTAATAAAAGCAAAAGAATATTTTGAAAAGGCGCTGGCTATGAGCCAAAAAATTGGAGACAGGGAACTAGAAGCACATAGTTATCTAAAGCTTGGAGATTTTGTTTTCGCGAAGTCTGACAATGATAGAACGGAAGAATATATCAAGAAGGCACTTGCATTAAGTGAGAAGACTGGAGATGTTGAGACACTGTTGGGGTCTCTCATTAAAATGGCAAAGCTTAGAGAGAGACAAGGAAAGATTCAGGAAGCAATCTCGTATTTACGTTCTGGTATTGCAAAATGCGAGGAAATGCGCAACTCCCTCCGCGACAACGATCAACTTAAGATTTCTATCTCGGATCACAATATTTTTTGCTACAGAAATCTCAGTAACTTACTCTGCGAAACCGGGAATCCTACTGAAGCTCTGTATGTTTCAGAGCTTTCCAAGGCCAGAGCTTTGGCAGATTTAATGTCAGTTCAGTACTCTTTGGACAATCAAATGCCAGCTGACTCTGGAGCATGGTCTGATCTTGAAGGCATGGTGGGAAAAGTGTTTAACCGCACTTGTCTGTACGTCTCATATTATTCTGACAAAATACATTTGTGGATTCTTAAAGCAAGGGGAACCACACATTTCCAGGTGATAAAAGGAAATGACCTGTTAGTTCGGGAAGGATCAAGTCAGCATTTGGATCAATTTTTTGATTTCAGAAGTTTTGGCATTTTACCAGAGGAGATTTGCGAAGACCAATGCTTACACGGTTTTCTACCAGAATCGAAAACATGGAATGACGACAGCCATGAAGGTTGGCGAATTGGAGAGGAACGTAGAGCTGACCAAGGACCTAAAATGAACCTTCCTATCTGTTACAAACTAATCATCGCTCCTGTGGCGCGCTTCCTTGAGGGCCCTGAAATCATCATTGTTCCTGATCGCGCTTTATACCAAATTCCATTTGCCGCCTTAACTGATGAAAGCGGAAAGTACCTATCTGAGACTTTCAGGATCCGTATTGCTCCTTCTCTAACAACTCTCAAGCTCATTAATGAAAGTCCAGCGGACTACCACTGTCAGACGGGTGCTTTGATAGTGGGAAATCCTGATGTTGGTGAGGTGCATTTCAAAGGAAAACTCACAAAGATTTCTCGACTGCAATGTGCAGAAAACGAAGCGAGGATGGTAGCAAAAAAGCTAGGAGTTGAGCCTTTGTTGGGACGGCAAGCAACAAAGCAGGCAGTACTTCAAGCGATGAATTCAGTGGCTTTGATTCATATCGGCGCACACGGTGATGCTGAAAGAGGAGCAATTGCCCTTGCACCATCTTTTCGTGTTCCTAACGGAATACCTCAAGAAGGACTCTACTTATTGACAATGTCTGACATTTCAAAGATTCGACTGCGAGCTAAACTGGTAGTCCTTAGCTGTTGCCACAGTGCTCGTGGGCAGACAAAGGCCGAGGGAGCTGTCGGAATTGCCCGAGCATTCTTAGGATCTGGCGCACGCTCAGTACTGGTATCACTGTGGGCCCTGGATGACAAAGCAACAGAGCAGTTAATGACTCATTTCTACGATCACCTTGTCGCTGGGGAAAGTGCTGGTAAATCTCTACACGAGGCCATGAAGTGGATGAGAAGTAAGGGCTATGACGTGAACCAGTGGGCACCTTTTATACTGATTGGAGATGACGTGACATTTGATTTTGGAGAGAAAGGTGTTGGCAAGAATGACCAGGACGGCAGCGAGTGA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF12770	CHAT	CHAT domain	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan
IPR024983	Domain	CHAT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan