Gene detail

Detailed information of XP_081308614.1 in Orbicella franksi

Genomic Location: NC_138158.1:4038344...4063321
NR annotation: XP_020611826.1, uncharacterized protein LOC110050261 isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081308614

ATGTCTGACGCCATTCTGAGTGTATTCACGCGAATGACACTCATCGCAACAGGAATTGGGGTTTGTTTCGCTTCGCCAGAAAATACTTCACCCAATCAGCGTGACACACAATCTCTAGTTTTCCTCCAAGAACCACCGTATATACACTATTATGTGACGCGTAACCAACCTGCTAACCTGACTTGGGTCGCAGTGAACGTCTGCCGAATTCAAATCAAGTGTAACGGCAAGAAATTTAAAGATGGACGCATTAGAGTGTGTGGAAAGTCTTGTCGCACCTGTAGAACAAGGACAAGGACCAAGATAGTGACTGCCGCTGATTTTCCCAAGAATGCGAAGAGTATAACGTGCAGGTGCAAAGTGTGGGGAAAGACAGTTGTTCGACAGTCTGATATAATAGTCATTGACAAGGCTTTTCTTCGCCGTAATTTTGGCACAGTTCAGTTGTATCACGTGGTACCTCCCAACACAACTGTGGTCTTAAAATGTAGGCCTCCATACGGTTCACCTCGACCAAACATCACGTGGTACAAGATTGGCAAGCCATCGCTTTTGCTTGGGCATGATGACAGGCGTCGCATCCGTTTAACTTTAAAGAAAAACTTAATCATCAAGCGCGTTCAGATGGGGGACTCGGGCGAGTATCAGTGTGTCGCGAGGAACATGGCGGCAAGACGAGTAGGCCTGGTGATCAAACTTGACGTTGGAGAGCCACCCATGTTAATGGTTGGGACACAGCAGGGACTTTACACAACAGACCTGCTCAACACGTCGACATGGAGACGCATTGAGGCCAAGAATATCGTGTCATTGGACTTTGGCTCGACCCCAAACTTGATTTACTGGACAGACGGAAAAAGAATAAACCGGTTTTCAATGCATAATGGCGTCAGTAAAGATATGCCTTTTGGTCGCGATGACGTCATCTCTGTGGAAGATCTGGCTGTTGATTGGATAGGAGATAAAATATACTGGATTGACGCCATGCATGATGGGATTTACATTGGAGATCCACCGAGCGGAAGAAAAGTAAAAATCGTTGACGAAAATCTCTATTCACCGAGAGCGATTGTCGTGAGCCACTCTGAAGGTTATATGTACTGGACGGACTGGGCCCGAACGCCAAAAATCGAACGCGCAAGACTGGACGGTACTGAAAGAAGAGTGTTCATAAGCAATGGGATCCAGATCCCAAACGGCCTGGCACTCGATGAATCAGACAAGAAACTCTTCTGGGCAGGGAAAGACTTAAATGGATACGGCATTATAGAAGCTGTTTCACTGGATGGACTAAACCGCAAGGTTATTTTCCGCCGTTCAGGTTATCACCCGTTCAGTTTGGATATTTTCCAAGACTTTGTTTACTGGAGTGACTGGGACAAGAATGCGGTGTTGCGCATTAACAAGACTGGTGGGGGTGGAGACGAGGTGACTGTAAGTGGTCTAAACAAGCCAATGGGATTAAAGATTCTTCATGAGCGTGAAGAAAAACATGGGGTAAATCCTTGTGAGAAAAGCAATGGTGGATGTGAGCATTTGTGCGTGTCCCTGCCGTCTCTGGGAATGAGATGCCTTTGTGAAGAAAACTTTAAACTCAATGCGAATGGTAAAACTTGCGACAAATTAGAACTTCAAGAAGAGAACAGAAACAAGTCAGGCTCAAATAACCCAATGGATCCCTCCTTGGTAGTAGTATTGGTAGTATTGCTAGTTGCCATCTTACAACTGGTGGTATTATTGGGCTTGGTCATTTCCTTGTTCAAGAAACGCTGTCCTTGCCAAACGTTACAAGACCCACCACGCATGACAAGACGGTCGACAAATCCTGACGGTATGCATGACGATGACGACGAGTCGCTTGAACTCACTGACCAAACAAAGCTCGGGCGCGCGGACCCAGATTCTAATAACGAGTCATCCCACTTTATTGGACAAGATAGCGGCGAACCCTCAGGTTCAGTGCCAGCATGTGGCGATTCATCAGTCGCAGTAAGCACGACTTTATTTTTCCTTTACCACTACACTGTTTAA

Transcript

Protein

Uniprot

Uniprot term	Description
A2ARV4	Low-density lipoprotein receptor-related protein 2 OS=Mus musculus OX=10090 GN=Lrp2 PE=1 SV=1
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1
P98164	Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens OX=9606 GN=LRP2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan