Gene detail

Detailed information of XP_081309624.1 in Orbicella franksi

Genomic Location: NC_138159.1:5666774...5989122
NR annotation: XP_020630282.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081309624

ATGGAGTCCCTCTTGAAAAACCTCAAAAAACATCTTGAATGCTCGATTTGTCTCGATACCTACAACCAACCCAAAACTATATCATGTCTACACACATTTTGCTGTCAGTGTTTGGAGAATCATGCAAGAGCCAGCCACAGACAAGGAAAGTTCCGTTGTCCACGGTGTCAAGCGCAAATCGATCTGCCCGAAGGAAATCGTTGCGACAGTTTGCCGACCAGTTTTTTCCACAACAGTTTGTTGAGTCTCCTTGCTGTCCGACAGAGCGGCGATGGAAGTAGCATAACTTGTGGCAACTGTAAGAAAAGAAGCTCCGATGTTCATTATTGCTTTGATTGCGCAAGATTTATGTGCCCCGACTGTTTAAGCGCGCATGAAGTTATGCGGGTTGCATTCGAGGGACACAAAGTCATGGCCGTCAAAGAATTTCAAACTCAAGACTACGAAGCCTTGTTGAAGCGACAGCCCTTTTGCTCTGAACAGTACCACGAGCGAGAGATCACAAGATTTTTCTGCCTTCCTTGTCAATCCTGTGTCTGTCATGCTTGCATAGTCACAGACCACCAAAACCACAAAGTTATTTTACTCGACAAAGCGGCTGACAACGAGAAAGACAATATCATGGCAGAAGCTGCAGCGACTAGACAAAACGAGACAGCCTTGAAGGATGTGATTCGAAAATTTGATGAAACCATTTCCAAGCTGGAAACCAACGTCGCAAGCGCTAAACGTGGAATCTCGCAATCAGCCGAGACAATGATCACAAAGATTCGAGAGCGCGAGCGAGAGGCGATTGCATCCGTGGAGAAAACACACGCGACGAGACTCGAGAAAATTAATTCCGCCAAGGAGAAAGCGGAATCGCTGCTCAATCAAATGATCCAAGCGGTTGAGTTTGCACAAAATCTGGTTCAGAGAAGTTCAAGCTCAGTTATCATGCAAAGCAAAGAAACTCTCAAACACAGACTTCAAGAGCTTCGTGACATTGAGATGCCAAAACACCACGAGACCTCATTCATCAAATTTACCGCGGCTTCTGTGCAGGGTTTGAGACTGGGCGGTATCGCAACCGAGATAATTGATGTGAGTCAATGCACTGTGGAAGGACTGGATCAAATTCTTCAGGCTGGTGTAGCAGCAGAATTGATATTACGCGCCAGAACACTTGAGGGAGAGATAAGCAACCAGCCTGATCTTAAAAATCAAATTGAAGTTCTCATTGAACCTACTGAAGACGTCACAAATGTGATTGTTAGCGAGAAAGGAAACGGTAAATTCAAGGTGAATTTTACACCAAAAGTGCCGGGCGCCTACAACATTGAAGTGAAGATCAACAACGATAAACTTCCGAACTGCCCTTTTACTACGCAAGTCAAAGAACGTGAAGTTGTTGTAGTCGGTGAGTTGACCTTAAAGTTATTTAAAGGAGATGAGCTTGAGAATCCACATGGAATTGCTGTAAATACGGCAGGGAACATTGCCGTAGCAGATTCGACTGAAAAATGTGTTTATATATTCGATAAAGAAGGCAACTGTTTAAGAAAAATTGGCAGCCAAGGAGAAAATGCCGTACGATTTCAGCAGCCACGCGGCGTTACATATTTAAACGATAACGAGATCCTGGTCGCAGATCCATGGAATGATAGAATACAACAAGTAGATGTCCAGACAGGAACTGTTGTAAAAGTCTTTGGAAAATGTGGTGGAGCAAAGGGAGAGTTTTTCAGCCCGGTTGATGTTTGCCTGGATGAACAACACCGCATTGTTGTAACCGAGCTCGGCAATCATAGGATACAGGTCATGACACAAGAGGGTGAGACTATTACCATGTTTGGAGACAGAGGCCCAGAGAAACTCAATCATCCAAAGAGCTGCATTCCTTACCAAAACATGTTTCTTGTAGCTGATATAGACGATAACTGTATTAAAGTTACAGTATACCTTCAGATCGGCAATTTTCTTCAAATTTGGATTTTTGGTTCAAAGTAA

Transcript

Protein

Uniprot

Uniprot term	Description
O75382	Tripartite motif-containing protein 3 OS=Homo sapiens OX=9606 GN=TRIM3 PE=1 SV=2
Q8MQJ9	Protein brain tumor OS=Drosophila melanogaster OX=7227 GN=brat PE=1 SV=2
M9PH32	Protein meiotic P26 OS=Drosophila melanogaster OX=7227 GN=mei-P26 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan