Detailed information of XP_081310388.1 in Orbicella franksi

Genomic Location: NC_138159.1:9350865...9357962
NR annotation: XP_020627692.1, roquin-1-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q4VGL6Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1
Q5TC82Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1
Q6NUC6Roquin-1 OS=Xenopus laevis OX=8355 GN=rc3h1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13445zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF18386ROQ_IIRoquin II domainDomainInterproscan
PF21206Roquin_1_2-like_ROQRoquin 1/2-like, ROQ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR027370DomainZinc finger, RING-type, eukaryoticInterproscan
IPR052249FamilyRoquin domain-containing proteinInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR041523DomainRoquin IIInterproscan
IPR048575DomainRoquin 1/2-like, ROQ domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13139RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0010494Cellular Componentcytoplasmic stress granuleInterproscan
GO:0035613Molecular FunctionRNA stem-loop bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

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