Gene detail

Detailed information of XP_081310587.1 in Orbicella franksi

Genomic Location: NC_138159.1:16368115...16381308
NR annotation: CAH3134172.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081310587

ATGGCTTTTGTCAAAAGGCTTTTTTACCTAGCAGCTGTGCTTGGAGTATCGCAACTGTTTTGTAACGTGGAGGCACAGCAATGTAGCAGACAAAGTCGAAAAGAAGCTTCCCAGTTTGGCATGATGTTACAGAGACACATCTTCAAACGGATGACAGATTCTTCGTATGTTTGTCTTAAGGAGTGTCGCCTTGACTTACGGTGCCAAAGTTTCAACTACGTTATTTCCAAAGAGATGTGTGAATTGAACAATCGCACCAAGGAAGCGAGACCTGAAGATTTTGTTCCAGACCCTGACAGATATTACTTTAGACGAGACTTTGGTAGAGTCCCCCTCGGTTCCATTCCTGAACTGCCTGCTGAATCGTGCCATGAAATCAAGGCGAGTGAAGGAGGACAAGCCGTCAGTGGAACATACTGGTTTTATTCTATTGTACCAGACAACGTTGCACTTGCATACTGTGACATGAAAACCGAAGACCTGGACGAATGCAATTCCTCAGTTCCTGTTTGTCACGAGAGTGCCACGTGTCAGAATACCATTGGTTCTTATCGCTGCTTATGTAACAGGACTGGGTTTATTTATCAGGATGGAAAAGGTTGCGTTGATGCTGACGAATGTGCCGACGGGTCACATGATTGTGACGTCAATGCCGACTGTAACAATACTGTGGGATCCTACATATGCTCCTGCAAACCAACATATTTCGGAAACGGAAAATACTGCACAAGTTTCCGTGGCCTCGGTTCATCCGTTATTCTTGCTGGTCTCGATCGCAAAAATTACACTGAGAAGCTGATTTCCTTTTTGGACCCAGTCCTCCTGAGCTCACAGCGTAGTGGGCTTGTGCGGTGCTGGCATGCCAAGACTGACGGCTCGGCTGCATCGATATGCCACGACAACTGTGATGGAAAAGGACCCACCGTAACCATCTTTAAGTCCGGCAACTACATATTTGCTGCATATACCGACGTGTCCTGGCATAGCACTCCTTGCGACTACTCTACAGCCAGCAAAGCTTTCATCTTCTCGCTTTACAACAACAAAGGATATAACCCTGTTAAGCTGACCCAGTATCAAAATCAGGAAAAAGCAATGTATGGTTGTTCCAATTACGGACCCACTTTTGGTTCTAATAGCGGGGATCACGACATCTACATATCGGACAACGCTTTGAGCAACCAAAATTCTTCTACCCGATGTGGCTCTACGTACTCCGTCCCCCCCGGATATTCAGCTGGTGATTGCAGGTTTTTCGTTGGTCCCGCAGGGGATAAGTTCACTCCTACTAACATTGAAGTGTTCTACGAAATAGGGGACCTTGGTACATCGCCCATTATTGGAAGCCTCGATTTCGGCAAATACTTGGGGAAGCTTATTTCTTTTTTAGACCCAGTCGTCCCGGATGCATTCCGCAGTGAGTTTGTACGGTGCTGGCATGCTAAGACTGACGGCTCGGCTGCATCTACATTCCACAACAACTGTGACGGAAGAGGACCTACAGTGACGATCATTAAGTCCGGTAGCTACATATTTGGTGGATATACGGATCTGTCTTGGCAAAATTCTGGCGGTTATACTTCAGCTAGTAAAGCTTTCATCTTCTCGCTCTACAATGTCAAAGGATATAATCCTGTGAAGCTGACTCAGTATCAAAATCAGCAGTATGCAATGTGCAAGGAGCCCAATTACGGCCCCAGCTTCGGTTACGGGCCTGATATCTACATATCGGACAACGCTACGGCCAACCAAAATTCTTCTACCCAGTGTGGCGGAACCTACTCCTTCCCCTCCGGATATTCAAATGCTGGCTGTGAATTTTTCACTGGAACCAGTCATTTCACGCCAACTGACATTGAAGTGTTTTACGAAATACGCGGCCTCGGTGCATCTGTTATTCTTGGCGATCTCGATCACAGCAAATACTTAGGGAAGCTGATAACTTACTTAGACCCAGCTCTCCCGAGTGCATCCCGTACTTACTTTGAGCGATGTTGGCATGCTAAGACAGACGGCTGGGATGCGTCAACATTCCACAGCAACTGTGATGGAAAGGGACCCACTGTGACCATTATTAAAGTTGGCCAATACATATTTGGTGGATATACCAATACGTCTTGGCTAAGTTCTTGCAGTTACTCCTCAGCCAGTAAAGCTTTCCTGTTCTCGCTTTACAACAAAGATGGATATAATCCTGTCAAGCTGACTCAGTATCAAAAAAAGACCGAAGCAATCTACAGGTGTTCCTCTTATGGACCCACTTTTGGTTATGGTGGAGGACATGTACATGATATCTACATATCAAACAACCCTACCATCAACCAACCTACCAATTCTTATACCAGGTGTGGCTCTACATATTCTGTACCCCACGGATATTTAGCTGGCGACTGTGGGTTTTTCACTGGAGCTTTATATTTCACTCCTTCTGATATTGAAGTGTTCTACGATATAGGTAATTGA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF00024	PAN_1	PAN domain	Domain	Interproscan
PF07534	TLD	TLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR006571	Domain	TLDc domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23354	NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan