Gene detail

Detailed information of XP_081312413.1 in Orbicella franksi

Genomic Location: NC_138146.1:16752527...16760355
NR annotation: XP_020611259.1, putative leucine-rich repeat-containing protein DDB_G0281931 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081312413

ATGGCGCGAGTCTGCTCGCTGAAATCAACCCTACTGTTAGGCGTAGTTTCTGCTGTTGTGACTTCGTATTGTTGCTGTAAAGAATTCCAGTCTCCTAAATTTCACAGAAACAATTTGTCAGAATCTGGAAACAAGTTACTTTCTTTCCAAACGAACACCTTGAGATCTGAAGGAGACAGATTAAGCAGTGTTGCCGTACGAACGAAACTCACACCTTTGAGCTACGATGGTTCATTGGGCTGTTTACACGATATTCCGATACCAAACAGGACATTAGACACTTCATTCACACCCCAACAAGAAAGAACTGTTCTCATGGAGATATTCAACCAAACAGCTGGTTATAATTGGCACGACAACACATACTGGGGAAATTACTCAGTATCTCACTGCACCTGGTATGGAATCACATGTGATCGTACCTTACGCTACGTCATCAGCATCTCTCTTACAAACAACAACTTAGATGGGACTCTTCCACCAAGCCTGTGGAAGTTACGTAATTTGCTGGGCTTGTGTATTAAGGGCAACAAAGGGTTGTCAGGCCATCTCAGTAACATCTTGTCTGCCAATATGACTACCTTACTACGCGTGGAACTTGCCTTTAACAATTTGTCTAAAGAAATTCCTGGTAAAATTTTGGCCGGTATGAAGTTGCTGGTGAAACTGCAACTTTGCTGTCAAAAAGGAAGCGGTCTTGATGGAGAAATACCAGAGGAAATCGGAAACTTGACGGAGCTACAAGTTCTTAGTCTTGGGGGAAACCTGGGGTTGCATGGTTTAATTCCGAAGAGCATTGCAAAATTGAAAAAACTCTACTTTTTTGATCTTGAAACTGCTGAGTACTTCAGCGGTTTTGAAAACTTATTCAACCTGTCATCTTTACGTTACATGCATCTTTCTCTCGCTGGACTAAGTGGAACTTTACCTGACGAGTTTGGATTGTACTTTCCCGAAATGATCGAGTGTCTTTTGCCAGGAAATAATTTCTCTGGAAACATTCCTTCAACGTTGGGCAACATGACAAACTTGCTGCGTTTAAACCTGGCAAGAAACCGTTTTTCAGGAAAAATCCCAAAAAGCGCTGGTTCAATCCGCAAGCTTCAAGTTGTCGACTTCAGTGGGAATCAGTTGTCATCGTTCGAGGAAGAAATTTCGTTTGAATCAATTAAAGTACTCCTTCTTGCTAACAATAAACAGCTCACTTTGTCTTTGGATGCCCTCTTAGAAGCGATGGAACCGGCCAAAGAATCCTTGCACATTCTTAACATCCGCGACTGCAATATTTCTGGCACGATCCCTGCCAAGCTTTGGGACTTCATAAAGTTGGTATCTATAGATCTGCGACATAATATGTTGACTGGAAAGCTTCCGTTGATGGGGTCGTCCGAAGTGTTGTATTTCCTACACGACATCGATGTGTCCATGAACAACCTTTCCGGGCGAATTCCTGAACATTTTGTAGATTTGCCTTCTCTGGAAGTTCTAAATGTCTCAAAGAATCCTCACATGCATGGATCTGACAAGGCAGGTGTAACGTTGCCTGATTACATGACGGTTGATTTTACGACTTTTAGCCACAGAAATCCTTCTGATAAGTTCAAGTGTCCCAATGCTCGTCTCATCTATAACAACGGACTTGTGGTTTTAGATCCTAGTTATTATCATTACCGTCTGTGCATTTGCGATGTTGGATACTATGGCTTAGGTAAAACTTGCTTACCTTGCATGCCAGGTGCAGTGTGCAAGGATCAAATGCTTCCTGTTCAGAATATGGTCATCAAAGCGGGATACTGGCCGTCATCACGTGATCAGAACGTGACTCATCTTGTTGACTGTTCACGGGCTTTGGGCACAAGCCCCTTAGTAAACACGTCTTGTAACCCAACGGGCGCTTGTGACTGCTGGATTGGACGGGTCATGGAGGAAGGAAAGATGAATGCCAGAACATCCACCGTCTGTAATAAGTCATGTCTTTGCCGTACAGGTAGCAAAGAACGGTTTTGTTCACTCTGTGAAGATGGCTATTACAAACAAGGGATCCTTTGCTATGCCTGCCCCAAAACTGAAGCCAGCGTCTACATCTTGGCTGCACTTACTGTCGTCACTACGGTGCTGTTAATTCTTGCGTTTTTCCTGTACGAAAGAAAGCGCTTTCTTGCTGTAGTACTTGTCTTCTCAGAAATAATTTTGTTAGCAGCGTTAGCCATGCTCCACATCATTCCAGGCTGGCTGCTTGAACTCAACACAATAGCTCTCTTTGTTGGTTTAGCTGAAAGAGGTAACGCCGCGCGAGGAATCCTTAAGATCAGCGTGTTTTATTTCCAAACTCTGGACGCTTTAATTTCCAACTATGATATCTGA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050647	Family	Plant LRR receptor-like serine/threonine-protein kinases	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48056	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06838	SLIT1; slit 1	-	Glycosaminoglycan binding proteins	ko00536	deepkoala