Gene detail

Detailed information of XP_081315496.1 in Orbicella franksi

Genomic Location: NC_138147.1:7398029...7419122
NR annotation: XP_020620985.1, trafficking protein particle complex subunit 10-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081315496

ATGGACTTAAAACCAAAAGTAACCTGTTATGGCGATAAAGAAGTTTATACCAAACTTAACCCAGAACTTGAGAAGAGACTGCCCAGGGAATACACAGAATGGAGAAGATCTTATGGAAGACCCCCTAAGACCGTAAAGTTAAAAGCACACTTTGTACGATTATCAGAGGGGATGCTTGTGGATGTCAGCAGTAAGGAAACATACACAACTGCGTCAAGTCTTCACAAACAACCATTCTTTCATATTTACTGGACTGACTGTCAGGATGCAGATGAATTCAAAAGTACAGTAAAAGATAACATCACAGAGTGGATGAGAAAGTTACGTGATAGGAACATAGTCGACTGGATGATTATTCAAGTCATATCACAGGACTCACTGAAGGGAAATAAGCCAAAAATACAGCTTCCTCGCAGCACGGTATTCGATAAGATCAAGAGTGACTTTGGTGGCAAAAATAGTGATAGGATAATTCAGTTATGGGAACCCTTCAAAGAAAGTCAAATAACTCGATCTCTGGAATCATGGCAGAACTTGGTCACTAAACTGCGGCAGTGGTTACTGGTGTCCTTTAACCGTCACTTGGGAAAGTTTGAAGACCAGGTCAGGTCACTGAGGGAGAAAAGAACAGAACCACGATGGAGTTTCACAACATACTTCTTGTTGCACGAAGAATTGTCATTTGTGTTTGAGATGCTTGGCTTGTTTGAAGAAGCTCTTATTCAATATGATGAAATTGATGCTCTACTCACACAACTGGTCATTAATTCTAAATTTGGAGAGTCCCTTGACTGCATCAATGTCTTCATGCGAGACTGTGTAGGCTGTGATGGAGTTTCATTAGCTAAGAGTTCTCAAGACTTTTTGAGACAGCTAATTAAGACTGAAGAAGCAAGCTATGTTGATCTGAGAAATTACTTGTTCTCCCGGCAATGCAAACTTCTTTTGAAGTTGGACCGCCGAGCTTGGGAAATTGCTCAACGAACTCTGGAATTTTTACATAATATCATTCACGAGCTGGCAATGGATAAGCTTGAGATGTCAATGCTTACTGGCGGAACATCATGCTGTATCATCTTAACAAGCCTGGAAGTGTTGAAAGCCTGCAAGAAAGAATGCTATGAGGAAGATATGGTGTACAGTCTGCACTTTGCCCTTCTCTATCAGTATGCTCGACAAAAGCTGGATCACTTGGGATCCCTGTGTGCCCTGATGCCTGATATGACACAAACAGAATCTGAACTACAGATTGCCAACACTCTGATATCTGGGATTGGAAAAACACAAGATGATGAGGATCTTGAACCCGGCAGTCCATCAGAGAGACTTAAAGAAGCTCTCTCGTATAGAGATAAATTTCAATCACTGTATTTGGAATTGACAGACTCGGCAATTAAAATCTTTAAAAACATTGGACGAGCCAGAGCTGCCAAGTTTCTTGGTGTGGACCTAGCTCAGTTTTACTTTTCTCGCGGAGAATTTGATCGTGCGGAGCCCCTACTGGTTGATGCATATAAGATGTACAAGCATGAGAAGTGGAGTCTCTTAGCATCACAGTGTCTGGTCAAACTGGCTCAGTGTCAAAAGCAACTCAAACACATGGACAAATATGCTGCTTCTTGCTCAATTTTGGCTTGTGAAGAACATCTGTCTCCTGACAAGAGGTCATATTATACTCAGGAGTTGTTGCAAGTCATGCGAGAGACTATGGACTCAGCTCAAGCTATCATTGTACGCGCTGAGCCACTGTTGAAAGTGAAAGATGTGCAGATTGAGCTGATGAAGGGTATCGGCAGTGTTGGGGAGTGTATCAATGTTAAACTCAAGCTCTTTAGCGCTTTGGAGGAGGAAGTGACGTGTGGACGGATCAGTTTTAGTATCCAGACAAATGAACTTAAACGTGGATCAAGCATTCGCTCAAGTAAACGAAACAGAGCAGCATCCCCGCCGGTTATTGTGGACAGCGGTCTCGCATCGGCTGCTCTCTCTGAGGAAGACCTGTCAGATAAACCTGTCCCAGAAGGCCAGGCGGCAGAGGGAGAGGATGCTCCAAACGAAGACAGAGAGGAAAGATCTCGCCCACTCCTCCTTAAACCAAAGTCATTACCAGTGGTGAAGAGCGTAGAAGAATTGAACGTGTTAGAAGAAGATGATTCGGACTGCTGCCTGCAATGCTTCAACGTCCCACTGAGACACGGCATCAATGAGTACAACCTCACTACACAGGTAGCGGAACCTGGGCATTACTTTCTGAAGCAGCTTTGCGTTGAGATTGGTCGGTTGGACTTTGTGTGGCCACAGCTGTCCTTAGCTAGAGAATCCAGAGGATTTGCGATTGTTAACGATCCTCCACGAATAACCTGGACACACGCAGAAGACCGCCATCTCTTATCAGGACTTCCGCAGCAAGTCACCCTTAGCATTTTAGTCGAATCTGGATCCATTGCAAACGACTCAGTACTGGAAATCACTTCACAGAACACAGGTCTCACTTTTGAACCCATACAGTCAGGCGAGGCAGTTGTGCATTCCTCATTAGGCAACGAAAACAGTAAGACTTTACCCTACAAAGTTCAAACCCTTACAATGCACGGCTATGATGACGTCACCGATACGTCCGTTGCTATGGTAACCCTTCCAGCCGTCGGACCGTATGCTAAGATTGATTTCAATCTGATTCTCCATGCGTCTTTGGAGAAGCAGAGTTTTCAAGAGGAAGTTACGGTATATAAGCTGATGTTCAGTTGTAAATGGTTATCTCCTGTGGTTACCGCCGACCTATCTTGTTCATTTCACCGTCCATTTTCCGTCCGTCACGTACTCCACTCATCAGAAACCACCCGTTTTGTTCAGGTCATTGTAAGTGGAATCAACCCAGTAGACCTGATAATTTCGTCGCCGGAGTTGATCATCACAAACTGCTCTTCAGTGAAGCTGATATCAATGCACAGTACTGCAGAATACGTGATCATAAATCACCAAGATGTGTCCTTCCTTTGGAAAATCGAGAGTGAAGAAGGTTCACCCTCGCAGTTGGATTGCGAGTTTCGGACTTCGTTTTCACCCAAACATTTTACGCCGCAGGATGATTCACTTCACTCATCTAAGAAGAGTAATTACCTGTACGACTTTAGTGTGGTCAATACTCAGACATTATACACCATAAGTTCAAGAGTAGAGCCCTCGGGTGAATCGAGGGAACTGTACGCGGGCTCAGCTTGTAAGTGGCATATTACCTTCACAAGTTTATCAGAAAAAGGAACTCCTGACACTTCACAACTGTTATACGACGTCGACTCTGATACAAACACGTGGGCTGTCAGTGGACGGAAAAGCGGTGTCGTGAAGATACCACAGGGTGTCATGGCAACAAGTGACGTTGTACTTGATGTGATTCCGCAAACTGGCGGGAAACTAGCAATGCCGGGAATAAAACTGATGAAGTACGTCGAAAAGGACGAGAAATCACCAGAACCGCACACCAAGGAGGACGAGGGCGCAGAAGTGAACGCGTCCGAGTCGCGGTCAAGTCATCAGTCCCCTCTGGTTTTACCGTTTGCTTGCGGTCAGGTTTATAACAAGACTATGGCAGTCCGTGTGTGCGTTTTGCCGAGCGCTAACCCTGATCTTGCCTGGATATGA

Transcript

Protein

Uniprot

Uniprot term	Description
P48553	Trafficking protein particle complex subunit 10 OS=Homo sapiens OX=9606 GN=TRAPPC10 PE=1 SV=2
Q3TLI0	Trafficking protein particle complex subunit 10 OS=Mus musculus OX=10090 GN=Trappc10 PE=1 SV=3
Q9VFB7	Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster OX=7227 GN=SIDL PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11817	Foie-gras_1	Foie gras liver health family 1	Repeat	Interproscan
PF12584	TRAPPC10	Trafficking protein particle complex subunit 10, TRAPPC10	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021773	Domain	Trafficking protein particle complex subunit 11	Interproscan
IPR045126	Family	Trafficking protein particle complex subunit TRAPPC10/Trs130	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR022233	Domain	TRAPP II complex TRAPPC10, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13251	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0034498	Biological Process	early endosome to Golgi transport	Interproscan
GO:0048193	Biological Process	Golgi vesicle transport	Interproscan
GO:1990071	Cellular Component	TRAPPII protein complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20307	TRAPPC10, TRS130; trafficking protein particle complex subunit 10	-	Membrane trafficking	ko04131	deepkoala