Gene detail

Detailed information of XP_081319664.1 in Orbicella franksi

Genomic Location: NC_138148.1:22484956...22742842
NR annotation: XP_027046452.1, nuclear RNA export factor 1-like isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9UBU9	Nuclear RNA export factor 1 OS=Homo sapiens OX=9606 GN=NXF1 PE=1 SV=1
O88984	Nuclear RNA export factor 1 OS=Rattus norvegicus OX=10116 GN=Nxf1 PE=2 SV=1
P58797	Nuclear RNA export factor 1 OS=Coturnix japonica OX=93934 GN=NXF1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12799	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan
PF09162	Tap-RNA_bind	Tap, RNA-binding	Domain	Interproscan
PF02136	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan
PF03943	TAP_C	TAP C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR005637	Domain	TAP C-terminal (TAP-C) domain	Interproscan
IPR025875	Repeat	Leucine rich repeat 4	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR015245	Domain	Nuclear RNA export factor Tap, RNA-binding domain	Interproscan
IPR032710	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR002075	Domain	Nuclear transport factor 2 domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR018222	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR030217	Family	Nuclear RNA export factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10662	NUCLEAR RNA EXPORT FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0051028	Biological Process	mRNA transport	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14284	NXF, TAP, MEX67; nuclear RNA export factor	-	Ribosome biogenesis	ko03009	deepkoala