Detailed information of XP_081322425.1 in Orbicella franksi

Genomic Location: NC_138149.1:17969295...18015129
NR annotation: XP_020621172.1, ATP-dependent RNA helicase DHX8-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q14562ATP-dependent RNA helicase DHX8 OS=Homo sapiens OX=9606 GN=DHX8 PE=1 SV=1
A2A4P0ATP-dependent RNA helicase DHX8 OS=Mus musculus OX=10090 GN=Dhx8 PE=2 SV=1
A1Z9L3ATP-dependent RNA helicase DHX8 OS=Drosophila melanogaster OX=7227 GN=pea PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21010HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan
PF07717OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF04408HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR003029DomainS1 domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR049588DomainDHX8, GH2-like domainInterproscan
IPR007502DomainHelicase-associated domainInterproscan
IPR011709DomainDEAD-box helicase, OB foldInterproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR049621DomainDHX8 helicase, S1 domainInterproscan
IPR048333DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000390Biological Processspliceosomal complex disassemblyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12818DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22EC:5.6.2.6
Spliceosomeko03041deepkoala

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