Gene detail

Detailed information of XP_081323419.1 in Orbicella franksi

Genomic Location: NC_138145.1:9384695...9399643
NR annotation: CAH3032951.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation OFRAN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_081323419

ATGGCTTTTTTGCAGATTTGTCGTCGACAGCAGGCAGTTTTCGAAGGTGTTACTTATTCCTTACAACGTTTAGTGACAAGGAGAAGTTTTTATAGTTCTTGCACACTACACCGGTCTCTACAGAACCAGCCTGTGTGTCCAGCTAAATGTACATTCTCCTTTGTAAGGCCAAGATTGAGCAATCGACCACCCACCTTCTTGTTTACTACTCAAGCTGTTCCTCTTCAACAAAAAGTTGTTGAATCAGTTGCAAAAGATGAGTCTTCAGCTGAAGGAGGAAAGGCAACATCAGGGCAAAAAACAAAAAACAAAACAAAGCAAAGCAAAAAGAAAAAGGACAAAAAGAAGGCAAAGACTGGTGAAGCTGTAAAAGACACAAACTCAAATGAAGTTGATAATACTGCAAGCAAGCAACAGGATTTAGCTGCAAGCAAAAAGAAAAAAGCAAAGCAAAGCAAATCAACAGCAAATAACAAGAACAAAAAGCGAAAAAGTAGTGCTAAAGCTGTTGAAGCAATAAAGGATGGAAATGCCATTAAGGACCAGGAGAATATTGTACACAATATTGATAAAAAACAGAGTTCGACTGCCAAGTATGCTGCAACTGATGCTAAAATACAAACTGAACAAATAAATCCAGATACTAAAGGTGGAAACACATGGAAAGATCGTAGTAGACAGCAAAATTCAGACAACACATTTTCTAAGGCTGCAGGGACCTCGCCAGCAATTGAATCTCTTGATAATGATGAGGCACACCCATTGCATTTTACTCCTGACGCTGTCCTAATTGAAGCAGATGAAGATCTACAAGGAGACTTTGAATTTAAGGACACTCATGTGATTGACTCAGCTGATGTGGAAGTGGAAAATGTTGAAGATCCCACTTTGCAGTCAAAAGTAGAGAGTCATAGTGAGAGTGAACCTGAACAACATTTTAAGGACAGGTCATTTAAAGATGGTACTCCAGGTGGACGATTGTTTAAAGAAGAAACTTTGGCTGAAATAGATGCTTATCTTTACCTTGGAAAACCGAATGAAGCAGAGAGGCTGTTTAACAGATACCTAAGAAAGGGGAAACAGTTTGAAGTTAGTGCATTTAACAAGCTGCTTCATGGATGGGCTCAGAAAGGAAACTTGATGAGCGTAAAGTTGGTTTTCAATTTGCTGCAAAACGAGGGACTAGAACCCGATATGGGAACATATGCTGCATTACTCCATGGCTATGGAAAGTACAAGGATGTGAATGGTGTGCAGAATGTTATCCATGAAATGAAGGAGAAGCAATTTGATGTCAACCACATTTTTCACAAATGCTGTTTGACAGAAAGCCAGGCCAAGGGAGTTGCTAATGCACTTAAACTTGTATATCCTCATTACAAACCAAGGATTACAAGTGAATCACAGAGTGAAATCAGCTACCCATCTCTGTTAAAGGAATGGTATGCTAACAGGGAGAACGTAGATATTAAATTGAAGAGTGTTCCTGGAAAACTTGAAAGAGAATTTGATGAATCCATACTGTTGGAACTTTTTGAAGAGCAAATTTCAAGGGAACTGTCAGGATTTACACCCATCCTGTCAATTGAAGTCAGCAAAGAAGAGGACACAGAGAACAAAAGACTCAAGGAAATGTTTTTGGAGTGTCGCAGCAAGTGGAAAGAAGCTCTGATTAAAAGCTTCGAGAAGGACATGTTTAAAACCAAGAATGCACAAGGAGACACCTTGCATCCCAGATATGCTTCCCTTTTTCAAATCTTTGAACATGATGAGCTCGCTGACATAATGTTGGACACCATTGTGTTTTATGTCAAGGGACGTATTGAAGGAGTTCCTTTGTATGGCATTAGTGGAGAGCTGGGCTCTGTGCTTAACCTGAAGTACATTGTGAAACACAGAGTGCAGTCAGGGATGTTAGACAAGATGAAGGCCATATATCAGGACTACTTTTCATATTTAATGGATGAAAAAGTTATGGCCACAAAGATGGCGCGAGAGTTCTGGAATGAGCTTGATGATATGTTGCCCCTTGGCGCTTCACTACAGCAAGATGTTCCAAACTGGCCTTGGGCAACAAAAGTTGTGTTTGGTTGCTTACTGGTGGAATGCTTCCTCAAGTCAGCTCACATTGATGTGAACCTCTTCAATGATGGCCCCGAGAAGATTCTGCCAGCATTTTACCACACCTACGAATTTAATAATGACAAGAGGTTTGGGATATTGAAGCCTCACCCAATCGTTTGTAAGTTATTCAAAGGCTACCTGGCAAAACAAGGAGAGATTTCCATGGAAACAACGTCAGTACCGATGTTGGTACCGCCACGTCCCTGGCGAGCAACCAAGGATGGAGCCTACCTTATATTACCGGTTGAGCTTATTCGCAGTGCTGGTGATGAAGACGGTCAATATGACAAACTACTGGAAAGTAAGACTAACAAAGAAGACTTGGTCGCCATATTTGACTCGCTGAACTTCCTTGGAGGGTGTGCCTGGAGAACTAACAAGAGAATCCTGGACATTGCCGTTCACATGTTTAACAATGGCGGCAATGAAGACTTAGCTATACCAGGACCTGTTGTACAACCAGAAGTGGATTCAATATTACTAAAGTCAGCTGATGCAGAGGAGAAAAACAAGCTAATCCGAGAGAGGCGATTGGCTAAGAAGCTGGCTCGAGAGCAGTACTCTCTAAGGATGTCTGCCCTGTACAAACTCTCTGTAGCCAATCATTTTCGTGATGACGTGTTCTGGCTGCCAATCAACTTGGACTTCCGAGGAAGAGTGTATCCCATTCCACCGCATTGTGCTCATGTCGGGGACGATCTAAATCGAGGAATGCTTCAGTTTGCCAAAGGTGTTCCACTGGGCGAGAAGGGCCTTGATTGGCTGAAGATTCACTTGGTGACATTACACGGGGCGAAGAAGAAATCTTCTTTGCAAGAGCGGTTGAATTACGCTAACGAGATCATGGATGATATACTGGATTCAGCTGATAATCCCTTGACGGGTCGAGACTGGTGGAAGACAGCTGATGACCCGTGGCAAACGCTGGCCACTAGCATGGAGATTGCAGACGCCATGCGCTCCCCAGACCCCACGCAATTTGTTTCCCATCAGCCAGTGCACCAAGATGGCTCGTGCAATGGCCTTCAGCACTATGCCGCTCTGGGCCATGACAGTTATGGTGCAAAACAAGTCAACCTGATGCCTGCCGATAGACCTCAAGATGTGTATGAAGAGGTGGCCAAACTTGTGGAAGCAGCGCGAGTGCGTGACGCAGCCGCCGGTCACGAAATCGCCAAGGAACTTGAAGGGAAAGTTACCCGTAAAGTAGTGAAGCAGACTGTGATGACCATCGTGTATGGTGTCACGTTCATTGGTGGTCGGCTGCAGATTGAGCGACAGCTGAAAGACTTGGATGTGGAGGGAAATGTTCTTTTTAAGGGCTCTTATTATCTTGTAAACAAAGTTTTTGCCAGCATCGGGGAGATGTTCACTGCTGCAAGAGGAATTCAGAACTGGTTTGCTTCGTCAGCCACACAGATCGCTTTGTCCGGTCATTATGTCGACTGGTACACTCCTCTTGGCCTGTACGTCAGACAGCCCTACTGCAGAAAACCTGTGAGACATGTCATAAGAACCAACCTTCAATGGCTCTTATTACAAGCTACAGGGCTACCTGACATTCCACCAGACACAAGGAAACAGCGCGGAGCTTTCCCGCCAAACTTCGTTCATTCCCTGGACTCCACCCACATGATGCTGACCGCGCTGTATTGTCAGCGGTCTGGGTCGACGTTTGCATCAGTTCACGATAGCTTCTGGACGCATGCGGCCAATGTGGGTGTAATGAATCGAATTTGCCGTGAGCAGTTTGTCGCGCTCCACAGCGAACCAATACTGGAAGAGCTGCAAAAACATTTCCATGAGAATTACTCAGGTTTGAAGCTTAATCGTCCCTTGAAATCCAAAGAGACTGGAGAGGAAAAAACTTACGTCTCGTTTGAAGGAAGACCAGAACACGGTGATTTTGACATCAAAGAAGTTCTTAACTCCACCTACTTTTTCTGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BKF1	DNA-directed RNA polymerase, mitochondrial OS=Mus musculus OX=10090 GN=Polrmt PE=1 SV=1
O00411	DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens OX=9606 GN=POLRMT PE=1 SV=2
O24600	DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPOT3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005224 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan
PF00940 all species →	RNA_pol	DNA-dependent RNA polymerase	Family	Interproscan
PF14700 all species →	RPOL_N	DNA-directed RNA polymerase N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002092 all species →	Family	DNA-directed RNA polymerase, phage-type	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR037159 all species →	Homologous_superfamily	DNA-directed RNA polymerase, N-terminal domain superfamily	Interproscan
IPR046950 all species →	Domain	DNA-directed RNA polymerase, C-terminal domain, phage-type	Interproscan
IPR029262 all species →	Domain	DNA-directed RNA polymerase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10102 all species →	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001018 all species →	Molecular Function	mitochondrial promoter sequence-specific DNA binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006390 all species →	Biological Process	mitochondrial transcription	Interproscan
GO:0034245 all species →	Cellular Component	mitochondrial DNA-directed RNA polymerase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10908	POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial	EC:2.7.7.6	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.