Gene detail

Detailed information of XP_081325635.1 in Orbicella franksi

Genomic Location: NC_138145.1:11760800...11777886
NR annotation: XP_020626464.1, parafibromin-like [Orbicella faveolata]
Species abbreviation OFRAN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P1J9	Parafibromin OS=Homo sapiens OX=9606 GN=CDC73 PE=1 SV=1
Q8JZM7	Parafibromin OS=Mus musculus OX=10090 GN=Cdc73 PE=1 SV=1
Q5ZLM0	Parafibromin OS=Gallus gallus OX=9031 GN=CDC73 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005352 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05179 all species →	CDC73_C	RNA pol II accessory factor, Cdc73 family, C-terminal	Domain	Interproscan
PF16050 all species →	CDC73_N	Paf1 complex subunit CDC73 N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038103 all species →	Homologous_superfamily	Cell division control protein 73, C-terminal domain superfamily	Interproscan
IPR031336 all species →	Domain	Cell division control protein 73, C-terminal	Interproscan
IPR032041 all species →	Domain	Paf1 complex subunit Cdc73, N-terminal domain	Interproscan
IPR007852 all species →	Family	Cdc73/Parafibromin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12466 all species →	CDC73 DOMAIN PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0034402 all species →	Biological Process	obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15175	CDC73; parafibromin	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.