Detailed information of XP_081325902.1 in Orbicella franksi

Genomic Location: NC_138145.1:12187062...12195672
NR annotation: XP_020627383.1, probable U3 small nucleolar RNA-associated protein 7 [Orbicella faveolata]
Species abbreviation OFRAN · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9P4X3Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp7 PE=3 SV=1
O15213WD repeat-containing protein 46 OS=Homo sapiens OX=9606 GN=WDR46 PE=1 SV=3
Q9Z0H1WD repeat-containing protein 46 OS=Mus musculus OX=10090 GN=Wdr46 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005689 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF08149
all species →		BING4CTBING4CT (NUC141) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040315
all species →		FamilyWD repeat-containing protein WDR46/Utp7Interproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR012952
all species →		DomainBING4, C-terminal domainInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14085
all species →		WD-REPEAT PROTEIN BING4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000462
all species →		Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0030686
all species →		Cellular Component90S preribosomeInterproscan
GO:0032040
all species →		Cellular Componentsmall-subunit processomeInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14768UTP7, WDR46; U3 small nucleolar RNA-associated protein 7-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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