Gene detail

Detailed information of XP_081326351.1 in Orbicella franksi

Genomic Location: NC_138150.1:22164515...22189888
NR annotation: CAH3039353.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation OFRAN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_081326351

ATGGAGTGCGGGAATGCTTTGGACGCAGCTTGGCTGTCGATCATCACCACCCTGGTTGCATTGCAGGGATTCAGTTTTGCAATTTACAAGGTAGGGACAAGGCCATGTCATTTGTCAAACCAAATCCTTGTACACGCCCTCATTAACTTTGCTGTTGGCTCACTGCTGTGGTATTTTGTGGGTTACTCTCTTTCATTTGGACCATCTCAGAAGGGCTTAATTGGTAGCCTGGATGATGCATTCCTTTTTGGTCTGTCTGGCACCAACTGTTCCTCACAATCCGATTCGGTGCCAGTAATTCTTTTTGCAAGTTTTGAAATGATGCTTGCTATTGTTACTCCATTTATGCTGCTATCTGCATGGACAGAGCAAATGAATATTCTTGGAGCATTGATTATTTATTTGTTGTGGCCAATTTTTGTGTACTATCCTATGACTCACTGGATAAGAGGAAAAGGATGGCTTCATCATCACTTTGGAATTGTCGATCAAGCTGGGAGCTTGACTGTGCATACTTCAACAGGGTCATCTGCTCTTGTTTTCACCAAGATCCTTAAGAAGGTTCATGAAAACCATACACAGAAACAAAGCCAAGAGAATAAGCACCAGCATCCTCAAAGTGTGTTTCTTATTGTTGGAGTGTTGATGACCTCTCTTGGATGGTACTCTGTAAATATTGGATCTGTACACAAGTTCAACGATGCTGTGATTCTTTCATTTATTAACTCTCACCTTGCTGTCTGTGCATCTTTACTGAGCTGGTTAATAGTGACTTATTTGACAAGGAAGAACTTTAACATGACAGAACTTCTACAAGGCATCATGGTCGGTCTTGTAGGTGTAAGTGCATCTTCTGGTTCAGTAGAGGTGTGGGCCTCATTGATCATTGGACTTGTTGTGGGTCTTATATCATCTGTTGTCTCATGGTCAATTCAGAAATACCAACCTTTATGGACCAGCACAGAGGTGCATGACATCACATACACCCATGGTGTTCCTGGTGTTCTTGGAGCAGTGGCAGCTGGTCTTTTCAGCAAGTCGTCGCAGGATGTGACGAGTGCCGATGGCGCTTTCTACTCCAACAGTGCTCAGCTAGGTGTTCAGTTACTGGGCGTGCTTGTAACTGTCACGTGGTCTGTGTTGTGGACCTACCTAATGACTTGGCTGATAAGACTAACTGTTGGCTTTAACTCAGTCACTACAAACGAAGCTTTTGGCTCCTATGAAACCCAGAATATTTCACCATCATCTGCTTTGAGCAAAGAAAAGGAGTCTCTTCACAAAAAGCTATTCAAGGCCGTGGGTGCGGGGGATTTACAAGAACTAGACGCCTTGCTCGCGAATCAAGTGTCATTTGGAGTGCAGAACTTTGACAAACGAACGCCACTTCACGTAGCCTCTTTGCATGGACATCTACATTGCGTTAAGTTCCTTCTGCGACAACCTGGTGTAGACATTCACGCGAGAGACCGCTGGAGAGCATCGCCGCTTTCTGAAGCTGTCCAGTCTGGGCATGACCAAGTGGTGCAGTGTTTGTTACGACACGGGGCTGGTTGGTGTGAAGATGGAGTGGGCGATCTGCTGTGTAGTACTGTAGTGAAAAACGACGCGGAGGAGCTTCAACGTCTTGTATCACTGGGTGTGGATGTTGATGCACCAAACTCTGACGGCAGTACCGCGCTTCATGTTGCAGCCACTGTAGGCAGTCGAGGAGTGGTGCAGTACCTTACTGATCACAGAGCGGATATCAATGCTGTAGACTCGTTAGGAAATACGCCTTTGAATTACTCGGACATGCATGAACATCGCGCGGTCAGCCAGTTATTGGAGGGTCTGGGCGCCAGGAGGTTATCGCATCATTACAGCATGCACGAAATCTGTGAAGTGGCCAGTACAGGAAACCTACAGATGCTCCGACACATGGTGCATAATGGCGCCACAGTCTGCTACAGAGATTTTAACAAACGAACGCCATTACACGTCAGTGCAGCTGAAGGCCATTTGGACGTGGTTAAGTTTCTTCTGTTGCAGCCTGGGACCAACATCAACTCTAGAGACAAAAACGACTTCACTCCACTTCTCGATGCCATCATGAATGCTCACTATGGGGTTGCCGAGCACTTGAAGGCGCGTGGAGGGACCTTTAGTGAGTGCAAGTTGGCTCAACTGATGACAAGCACTGCCAGCACCGGGGACACAAGGACCCTGAAACGATTGATAAGATGGACCGGTCACGTGAACGTGTCTGACTTCGATGGACAGACCGCACTCCACACGGCAGCGATGTACGGCAGGCTCAATATCGTCAATCTGTTGTTGAAAGAGGGCGCAGATGCGACACTTGTTAATCGGTATGGCCAGATTCCCTTGCAAGTAGCAGTAGCAAATGGACATACAGCGGTTGAAAGAGAACTACGAAGATTTCTCAAGCTCACGGAAGAAATTCTCTTAGACGATCACGTAACAGCGACGTGTTACAGCCCGCAAGCGAGAAGAAGAGGAAGAAAACACAGAACAGAAGCGGCACAGTACAATTATTCAAAGCGGGAATCTTGGACCTCGACGGAAAACTCCCTGGAAATACGCCGTCATGGCGGGTACAGCGTAAATAACAGTGTTCACTCTTCAAAAGAAATAATCAACTTAGCGGACGTACGAGCGCCGCTTGAAGCGAATGCCAAATCCCGGCCTCCTCTACTACATCTTAGTACGCAATCTATTTCTAGTCTCAGCGCACAAGCTAGAGAGATGGCGGGAGGACAGCCGGATTACGTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BLG4	Ammonium transporter 1 OS=Dictyostelium discoideum OX=44689 GN=amtA PE=1 SV=1
O26759	Putative ammonium transporter MTH_663 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=MTH_663 PE=3 SV=1
O28525	Ammonium transporter Amt3 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=amt3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005807 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan
IPR050663 all species →	Family	Ankyrin Repeat and SOCS Box	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24193 all species →	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_081326351.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.