Detailed information of XP_081328686.1 in Orbicella franksi

Genomic Location: NC_138151.1:3231243...3250866
NR annotation: XP_020603217.1, collagen alpha-1(X) chain-like isoform X1 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00229TNFTNF(Tumour Necrosis Factor) family DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008983Homologous_superfamilyTumour necrosis factor-like domain superfamilyInterproscan
IPR006052DomainTumour necrosis factor domainInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005164Molecular Functiontumor necrosis factor receptor bindingInterproscan
GO:0006955Biological Processimmune responseInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005604Cellular Componentbasement membraneInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

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