Gene detail

Detailed information of XP_081329152.1 in Orbicella franksi

Genomic Location: NC_138151.1:28600460...28631456
NR annotation: XP_020602432.1, neural cell adhesion molecule 1-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081329152

ATGGTGAAGTTACTGCTAGTAATCGGAGCTGTCCTTGCGGTGACCGTTAGTCGCACGGATGGAACAGTAACACTGCCAACTAATACACTCAAAGCCCAGCAAGGTAGAGACATTCCTTTTCAATGTGTGGTAACGGGAGAAAGCTTTGTGGCTTGGGTAACACCAGCCAAACCAGCACGACCAGGAAAACCTGCTATACCAAGCGTTAGAATTCCAGCTTCTCAAACAACACCTGTAAACAGGAGAAAAATCTCAGTGTCTGGAGACACTTATGAACTTACCATAGAGGATCTGATAGTTGATGATGGTGGCGAGTACATCTGTGAAGGATCAGTTGAGAGTAAAGTTTTCACTCTTCAAGTTGACTTTGAAACATCACAAGTTGTTACAAAACAAGAATTGCATCTTGGTCGACCAGGAACAATAACACTGGATGTATCTGCATATCCACCACTAACATATGACTGGAGAAAAGACGGACAAAAACTGGAATTCCCTATGGCAGGCAAAACACTTGACCCATACACTGGTTCTATTTCCATTGACAATGTCCAAGAAGCTGATGAAGGAAACTACACGTGCACAGTGAAATTTGGTACAGCAGACACTGTTGAGATTGAAGTCACAACTATAGATGAGCCCAAAATACGAAAGTACCCAGGGGGCATAGTCTATCGTAGACTAACACAGGGTAACAATGCTACATTTCATTGTGATGTCGAGTCTGGACATCCAAAGCCAGAAATCACTTGGTATTTTGGGTGGACAGATACACTGAAAAAAGTTGACCCACTCTATGATGCAAGATTTACACATCCAACTGATGAAACATGGCTTATTACTGGAGTTCAGACAACAGACAAAGGCAAATATAGGTGCATAGCTAAAAACAAAGCTGGAGAAGATGACCTGAGGTTTGAGATTACGCATGTTGATGTTCCACCAACAATCGATCCAATGACAGACATAATAGCAAATGCTGGTGATAAAGTGGACTTGGAATGCGTTGCTGCAGGAATGCCAACGCCTAATGTGGAATGGTACTATAGTGGAAGTTACTACACTGGACAAAAGGATCAGATCCAACGCGGTGAAAAGAGAGTTCGACAAATATCATTTGCAAATGTCAACTTGGTAAACACTGGAGAATACACTTGCCAAGCAAAAAATGGTGCCCTTGATGGAAATGGTGATGTTATCGAGGTTAAGAAAACAATTAACCTCTTTGTGAGATCTCCACCCCAAATTAATGAGGAAGCATCCCCTACGCCAGTATACTCTTTTGTGGGAAACAGGAAATCTGTTGATGTCACATGTACCTTTTTTGGATACCCAGTGCCGACAGTGATCATGAGAGATGAAAATGGTACCGAGATTGCACAAGGAAACAGCACAGTATCCTATACCATCAGTTATACAACCAAAGATGACTTTGGAACATTTAACTGTACTGCAGAGAGCCCAGATGGCACGGCACAATATTTGGTTGAGTTACGAAAAGCAGTGCCGCCTGGGCCACCCCGTGATGTGACTACAAACAAGACTTGTAAAGAAATCACTCTTATGTGGAAGCGTCCATTTGATAATGGTGGCATAGAAATTGCCAGTTATATCATAACAGTACTTTCTGAGGGTAACAAACTGTACACAGAAAATGTTGGTGGATTTACAGTTGAACATAACATTGGCTACAGCTTTACCCCAAAGACAAAATATGAAATACGAGTTCAGGCACGCAATGAAGTTGGACCTGGAGCTGAAGAGCAATTGTTTGTAGAAACTGATGAGTTCTGTGTGCCTGGAAAACCACGTATCACCAACACAGAGCTTGAAGTTGATGTTGAGGACTTCATTGTAACATGGTCTGCACCACTGTACAATGGGGGTGATGATAACTTAAAGTACAGACTGGAATGGAGGATGAAACCAATTACAGACGACACTGAAGAAGGCATAGAAGATAACATTGCTGAGACCCAGTTCAAGATAACTGGCCTTGAGCATAGTGAAGAGTATGAGGTAAAACTCTTCAGCGTCAACCAACAAGGACTCAGTGAGGCTGATATCAAGACTTTCAAAACAAAGCCCAATCCTGTTCCTTCAAGCACGCCTCCTTCTAAAACCACTACTTCAGTGAAGGTTTCTGAATTGCACACTACTGCAGCATCTTCAGGGAAAGCAACTGTCTTAACTACACCTTCAGCAATTGACCCCAAAGTAGGAGCTCGTACCGCGGGACTTGGATCGGGCGCCATCGCTGGGATTGTAATCGCCGTTATTCTAATCGTCTTGATCACGATCGATTTATTCTGCTGCTTCTTCAACTCTTGCGGCATCATCTTCTGTTGTCACCGGGCCATTTGCGGTGTGGAAGGTGGAGTGACGGGAGGAAAAGATGATTACAAGGATGGTAAAGCCACGGAGATGGAGAAAAAACCACTGCCTGAAAATGTGTAG

Transcript

Protein

Uniprot

Uniprot term	Description
O15394	Neural cell adhesion molecule 2 OS=Homo sapiens OX=9606 GN=NCAM2 PE=1 SV=2
O35136	Neural cell adhesion molecule 2 OS=Mus musculus OX=10090 GN=Ncam2 PE=1 SV=1
P34082	Fasciclin-2 OS=Drosophila melanogaster OX=7227 GN=Fas2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0050808	Biological Process	synapse organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06491	NCAM, CD56; neural cell adhesion molecule	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala