Detailed information of XP_081330228.1 in Orbicella franksi

Genomic Location: NC_138152.1:20474944...20501199
NR annotation: CAH3162194.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q90YB1DNA ligase 4 OS=Gallus gallus OX=9031 GN=LIG4 PE=2 SV=2
Q8BTF7DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2
Q5R6L3DNA ligase 4 OS=Pongo abelii OX=9601 GN=LIG4 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01068DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan
PF04679DNA_ligase_A_CATP dependent DNA ligase C terminal region FamilyInterproscan
PF04675DNA_ligase_A_NDNA ligase N terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029710FamilyDNA ligase 4Interproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR012310DomainDNA ligase, ATP-dependent, centralInterproscan
IPR012309DomainDNA ligase, ATP-dependent, C-terminalInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR000977FamilyDNA ligase, ATP-dependentInterproscan
IPR036599Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR044125DomainDNA Ligase 4, adenylation domainInterproscan
IPR012308DomainDNA ligase, ATP-dependent, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45997DNA LIGASE 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005958Cellular ComponentDNA-dependent protein kinase-DNA ligase 4 complexInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006297Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0032807Cellular ComponentDNA ligase IV complexInterproscan
GO:0051103Biological ProcessDNA ligation involved in DNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0071897Biological ProcessDNA biosynthetic processInterproscan

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