Detailed information of XP_081331453.1 in Orbicella franksi

Genomic Location: NC_138152.1:22177835...22226228
NR annotation: XP_027047497.1, E3 ubiquitin-protein ligase UBR5-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q62671E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus OX=10116 GN=Ubr5 PE=1 SV=3
Q80TP3E3 ubiquitin-protein ligase UBR5 OS=Mus musculus OX=10090 GN=Ubr5 PE=1 SV=2
O95071E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens OX=9606 GN=UBR5 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|HECT
Ubiquitin FamilyE3|E3 activity|UBR-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF00632HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF00658PABPPoly-adenylate binding protein, unique domainFamilyInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF05585DUF1758Putative peptidase (DUF1758)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036053Homologous_superfamilyPABC (PABP) domainInterproscan
IPR003126DomainZinc finger, UBR-typeInterproscan
IPR002004DomainPolyadenylate-binding protein/Hyperplastic disc proteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR000569DomainHECT domainInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR009091Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR047503DomainE3 ubiquitin-protein ligase UBR5, UBR-boxInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR008737DomainPeptidase aspartic, putativeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46276E3 UBIQUITIN-PROTEIN LIGASE UBR5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0034450Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0090263Biological Processpositive regulation of canonical Wnt signaling pathwayInterproscan

TOP