Gene detail

Detailed information of XP_081333883.1 in Orbicella franksi

Genomic Location: NC_138153.1:19886580...19916786
NR annotation: XP_020616798.1, uncharacterized protein LOC110054782 isoform X3 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081333883

ATGTCCCAGTTCAAAGTTGAAAAAGTCACCAAAGTAAAAGGATTGTCAGATCTATCTGAGAAAGCAAAAATCGGGGAAAGGACCGAAACCACTACCAAGCGAAATCGAGGAGCTGCTACAAGCAACGAACGCCCTGGCCCTGCGCAAGGCAGACATACGTCGCTAAAGAAATCTGCTTCACCTTCGAAATCCGCATCCAGTGAGGCTTCTGTGGCTAAATCCACAGGAAGAACCCCAATTTCACACCGTACTACTCCACCAAAACCTGCTACAAGAACAAAAACAACCACTCAGCAGACTTCAACAACAGCTGCCAAGATTTGTACAGCTTCTCAGCAAAGTAAACAACCTTCTGGCTCTGCTAAAGATGTCTCGCCAACCAAGAAAAAACCAACCAATCAGCAGGGAGTAACACCTGCTCCACGCACAAGGACAACTGTTGTCACAAAACAATCATCTCAAAAGACTGTGAAGGAACCAAACAGCAAGAAGAAAAATGAGATCAAGAAAGAGAATAGCTATGATGCTAGTGACAGTGACTCGGAACAAGGAAGTGTTGATCGATTGAACACTGATGGTGACTTTGGCTATGAAACAGGCTCTCTTGACGACAGTGATGTGTCAACAGGAGAGCTTCTTAGCCCGTCAGCCAAGGATGAGAATAAGACTATTTTAAGTCCTGACCAAAGTGAGACTACTGGTTATTCATACGCTGATGTTGAATTTAGACCACTGTTGGTCACAAATGATGGAGGTATAGCTACACGGAACCCAGAGAAATCTCCTTCAGAAGAGGATATTTCACTTTCAGTCAGTGACAATGCCATCAATGACCGCAGATCTTATACTTATGCTGGAGATGAATTTCGTCCTTTGATTGTGACAGAGAGCGGAGGCATTGCTGCTCCTGTTGAAAGCAGGAAGTCGTCAAAAGATGCTGATAGTGGAAATGCTAATGAAAGTATCAAGTGTAGCAGTGGGGGTAGAAAAATGCTGATGGAATATGAAGAGGTTCAAATTGTTGATGGTGGCTATGACAGATCAAACATTAAATTAACATCTGCTAATCAAAGAAATGTGGCTGAAAATGATGATTTGCATGCTGTTGGACCCTTGAATGATGTCTATGCTGTTGTTCAGAAAAAGCCAAAGGAAGCAGATTTAAAAGAATCTAAAGACAATGCAGTACAGAAACAAAGTACTCCAGTACAGAGACCGATAGTTGAGTTGGGTGAGGTTGCACCGGCAATCCCTGGGGGATGTAAAGATTCAAACATGTATGAAGCTATTACAGGAGAGCTTCAAAATATGATCATGGCTTGTGATGAGGTAGAGCTGAATGAGAAACCAGCCAGGACAAATTCCAATGAGAGAAAGGTATCTTCAGGAGATAAAAAGGTGCCACCACCCATCCCAAAGCCTTACTCAGGACCAGGGTTGAATGCATCAAAGGAACTGTTGATACAAGAAGCACCAGGAAATTGTGATTCAGAAACCACAGAAGTCATTTCACAACCAGTGTATGCCACTGTACAGAAAAAACCCAAAGACAAACCAGAAGGGGAGAAATTATCTGGCGAAACAGACAGCAAAAGACCTGCTGAAGTGCCATCACAAGAGAGCCAGCCAACATATGCTGTGGTGCAGAAGATTTCAAAACCACAACAGAGTGGTTCAGTTGAATCGCTTGATCAGCTAAGAATACCAGTGATGTCTGGTGATGATGACGATGATGAAGCAAGTGAAGAAGAATTACCACCACCTCTTCCCTCAAGGTTACCCAATCTTGAGGACACCATGAAAAGAACTGAACCCTCTGAAAATGTCTTTCAGTTTGATAAAGTGGAAAAACCAGAAGAAAAGTCAAAGAAGGGTGGTTTCAAAATGTTTAAAAAGAAACATCGGCGCCAGCTGTCAGATGGAAATGTTGTTGCTAAAATGAAAAATGATAGTGAAAGAGGTGACTTCCCCCCCAGTGCAGGGGATAAAAACAAATTTCACCATCGCCGTTCAAAATCACAAGCAGATGTAATGAAAATGGGGGAAAACGGCGAGGGTTCACTGATACCAATACAAACCCAAGATATGTACACAGAAATTACAATTCCAGCTAACAAAGCAAAGAGTTCTTCTGATGAAGTTCCACCAGTGAAGCCTTACTTGGAAGTTGACATAACAGAACCTCCACACACTCCTACAGATATAAAGAAGGAGAAGAAATCCATGGAAGGGGACGGAGAGGATCAGAATGCTCCATATGAGTTGCCTGAGGGGTGGAGGGAAGTAAAGGGTGATGGTGGTACATATTACTGGCATGTCGCATCTGGAACAACTCAGTGGACCCTCCCTCAGGTTGCAACAAGACCAAAGGTACTCAGTTTCCCAGTGCATTCTATGGGTTGGATTGAACTTGAAGAGAGTGAAGTGGCACCACATAACATGAGCGAGACCATAGCTGAGTGCATCTCCACACTGGCACAGAAAAGAAAGGATCTCTGGAACACTACAGAGACATGGGGAGAGGGAAAGGACATAAGATTGTTGTTAGAAGGAGACACCTTAAAACTTGTAGAACCAAGAAGCAAAGTCACATTGCTAGTCCAACCTGTCTCAAAAATGAGAGTGTGGGGAGTTGGCAAAGAAGATCAGAGGGACTTTGCTTATGTTGCACGAGATCCTTCAACTGGTAAACACAAATGTCACATGTTCCGTTGCCATGGTAATATTTCTGGCCGTGCAATCACGAATGCATTGCATGACATGTGTAGTAAAATCCTGGAAGAAAAGAAGAAAGCACAGGAAAGCAGTAGGAAAACATCGATCCAAAAGCCGTGGTCTGACATCATTAACACTCCACCGCCACCATCAGCAAGAGATAATGCAAGTTTTAATGAAAAACCACATGTGGAACCCAAGAAGAGCTTTTCTGCTAAATATGTTGGGTGTATAGATGTACCCAAACCAACAGGTGTGGAGATCTTGAACAAAGCAATCAGCAAACTAATGAGTAAAGGCACCAATACATGGAGAACAATCCTAATTGAAATCAGCATCTCAAACATTAGGATAACAGACTGTACGACTCAAGAGTTAATTTCAGAAGACAGAGTCAGATTCATGTCATTCTTTGGAGTTGGAAAGGATGAAAGACTGTGTGGTTATATTATAAGCACTGCTCCTGAAGTGTATGTGTGCCATGTGTTCCAATGTGCTCCTAATGCCGCACCTCTGACCAAGGCATTAGCTGAAGCATGCCAGCTACGTTTCCAAAAGTGTGTAGATGCTCATCCGGAAATTATGCAAAAAGTAGTCACTGCTGAGCAAGAAAAGGCAAAAGAAAAACCTGACAAAGAAAAGGATAAAGCTGGTTTTATGACAAGTGTTCAAGGGTTACTTGGAAAGCTTGGGCCAAAGAAAGGGGGAGGGAAGAAGGAGGAGGGAAATGCACCTGAGAGCAAACCAGCTTCCAGCAACATCCCAGTGATAACTTGTAAGCCGTCACATACCTTTATGGTGAAGTACTATGGTGCCCTGCCTGTGGCTGTGGGTACAGGAATAGAGACAGTGGAGGAAGCAGCTAAGCATCTGGCTGGAGGAACTCTGTTAGTTTGTCAGTTGGATGTCGCTCTTAATGGCGTGACGCTTTACGACAGTCAACGGAGTTCATTGTCAAAGAGGAACCTGGATGCTGATACTATATCATACTGTGGTCTTACAAGTAACAGAAGCCATTTTGGTCTCATACAAAGCATGGGAGGAGGAAAATATGTTTGCCATGTATTTGCAGAATACAAGACCAAAGCTGGGCCTATTGTTGCTGCCATTCATGAGACACTGTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q92870	Amyloid beta precursor protein binding family B member 2 OS=Homo sapiens OX=9606 GN=APBB2 PE=1 SV=3
Q9DBR4	Amyloid beta precursor protein binding family B member 2 OS=Mus musculus OX=10090 GN=Apbb2 PE=1 SV=2
O00213	Amyloid beta precursor protein binding family B member 1 OS=Homo sapiens OX=9606 GN=APBB1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR039576	Family	Amyloid beta precursor protein binding family B member 1/2/3	Interproscan
IPR006020	Domain	PTB/PI domain	Interproscan
IPR001202	Domain	WW domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14058	AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001540	Molecular Function	amyloid-beta binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04530	APBB2, FE65L; amyloid beta A4 precursor protein-binding family B member 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala