Gene detail

Detailed information of XP_081334241.1 in Orbicella franksi

Genomic Location: NC_138153.1:19139506...19169071
NR annotation: XP_020619853.1, kinesin light chain-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081334241

ATGGCACAGGGAGCTGCAGACATCGATGAAATTTCTCCCTTCCGCTTCTCACAGCAAGCTGCGCCTAGAACAGTAAAACATGGCACACCCAAAGATGATGAATTAGAAGAACTGGGTGATGAAATTGTAGAAAAATGGAAAAAGCTTGGGCGTCGCCTAGATGTCAGTGATGCAAAGCTTCATGAAATAAATCAAGCTCATGACCAACTGTCTGAAAAGGGATACCACATGTTAAAACATTGGAAACAAGAAAAAGGTCCTGCTGCGACTTACCAGGCTTTGTGTGATGCGTTAAAACATAAATTTGTACAGCGCCAAGACTTGGCAGTACAGTTTTGTTACATTAATGCACCCGCTGATCCAGTACCAGAAGGAACAGTAACAGGAGAAGTCTCTGGTGTTACTTCAAGAACACATTACAACAGAGACTCCAGTGGAGTGAGAAGTGGTCCAAAACGGAAAAGCCGTGAACGAGGTATGTTGTCTTGGAAGATTCACTGTGTTAGTGCCACCAGCAGAAACTCAGAGGAGCAAGATCCTCAAGAACAAAGTGAAAGGGTGAACAGATACATGGCACAGACGGCTGTTGACGTGGTCATGAGGGGAACATTTGATCTCTCCTCTCTTGAAGGACTAGAAGCTTATCACGCATACTTAGTAGGAAAACTTTATCTATGGAATGTAACCTTTGAGAGGAGTAGCATCAAAACAACCGTCAAGTGCCGTAGCCTGGAGATTCTTGAAGGCCTGTGGGAGGATTATTGCTCTGGTCGCCTCAATGCAGAAGCCGAGAAGTGCCTCATTACAGAGAAGGTTAAGGACGCGCTTGGTATGGAGACTATAAAGTTAGTAACCACTATGATGGAAGAAGACTACTTGGCTTGCAAATTGTCTTTAATGGAAGTTTCAGGTTCTTCTGAAGAAGTACCACAACTTGCGCTCAATATGGCTGACCCACAGCAAACTAAGGAGTACTTTGAACGTGCTCTAGACATACAGCTGGAAAAGCTTGGGCCCGAGCATATTGACGTTGCGACTACGTACAACAACTTGGGTCTTGTACAGCGTGACATGGGCAACCTGCAGCAGGCCAAGGAGTATCATGAACGTGCTCTAGACATTGCACTGAAAAAGCTTGGGCCCGAGCATACTCACGTTGCGGCTACGTACTACAACTTGGGTCTTGTACAGCATCACATGGGCAACCTGCAGCAGGCCAAGGGGTATTATGAACGTGCTCTAGACATAAGACTGAAAACGCTTGGGCCCGAGCATACTGACGTTGCGACTACGTACAACAACCTGGGTGTTGTACAGCATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATAGGACTGAAAAAGCTTGGGCCCGAGCATACTCACTTTGCGACTACGTACAACAACTTGGGTGTTGTACAGCATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATCATGAACGTGCTCTAGACATTAGACTGAAAAAGCTTGGGCCCGAGCATACTGACGTTGCGACTATGTACTACAACTTGGGTGTTGTACAGAATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATTAGACTGAAAAAGCTTGGGCCCGAGCATACTGACGTTGCGACTACGTACAACAACTTGGGTGTTGTACAGCATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATTAGACTGAAAAAGCTTGGGCCCGAGCATACTGACGTTGCGACTATGTACTACAACTTGGGTCTTGTACAGCATCACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATTAGACTGAAAAAGCTTGGGCCCGAGCATACTGACGTTGCGACTATGTACTACAACTTGGGTCTTGTACAGCATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATAGGACTGAAAAAGCTTGGGCCCGAGCATACTGACGTTGCGACTACGTACTACAACTTGGGTCTTGTACAGCATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATAAGACTGAAAACGCTTGGGCCCGGGCATATTGACGTTGCGCGTTTGTACATTAAGTTGGGTGCTGTACAGCGTGACATGGGCAATCTGCAGCAGGCCGCGGAGTATTATTTGCTCGCCGAAGACGTTAGGCTTAAACAATTTGGAACCGAGCATATAGACGTTGCGCCTTCTCACATTAACTTGGGTGATGTATAA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan