Gene detail

Detailed information of XP_081337048.1 in Orbicella franksi

Genomic Location: NC_138154.1:3550799...3637182
NR annotation: XP_020622253.1, uncharacterized protein LOC110059875 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_081337048

ATGTCTTCACAGGGAAAGGAGTCAAAATCATCGAGCTCTTCCCAGGAATCCAGTGGAGGAGAATTGCAAGAAAATAGTGGAGCACACTCATCATCAAGAAGATTAAAAGTTACTTTCCTGGCATCAGAATGGAGATCAAGTAAAGGAGGACTTTCCACTTTAAACAGAGAGTTAGCAATAAACGTTGCAAAAAGTCCTGAGGTGGAGGTAACCTTCTTTGTCCCACGATGCAACGAGGAGGACAAGAAAACAGCTCTTGGTCACAAGATTAATCTTGTTGAGGCAATCAGGCGGCCTGGTATGGATGAGCTGGCATGGCTAATCCGCCCACCAAATGATTTACAAATTGACATAGTTGTGGGTCATGGTGTCAAGCTTGGTCATCAAGCACAATTTATACGTGAGTCACACCAATGTAAATGGGTTCAAGTCGTTCATACCGCCCCTGAAGAACTTGGCATGTATAAGACATATTCGAACCCAGTATCAGTTAATGAGAAAAAGCATGAAATAGAAGTCGAACTTTGTGAAATGGCTGACTTTGTTGTAACAGTTGGGCCCAAATTGACTGAGGCTTTTCGCACTTACCTTCGCCCGAGTGGGAAAGATCAAATGGTCTTTGAATTTACTCCTGGAATTTTGTTCGAGTTTTGTGAAGTCCAGCAGGTTGATGATGAAAGAAAGAAATTTGGCATCCTTGTTTTTGGGCGTGGGGATGACGAAGACTTTGAATTGAAAGGATTTGACATTGCCGCCAAAGCTGTTGCTATGGTAGATGACACCCATCTAACTTTTGTTGGTGCACCAGATGGAAAGCAAGACGAGGTTAAAACTCGTTTGCTCCAGTATGGCATCCCCGCTCAACGCCTAACTGTCAGAAGCTTTTTACAAAGCCGGGAGAGTTTGAAAAACTTACTTTGCGAAGTGGATCTTGCAATCATGCCCTCGAGAACGGAGGGCTTTGGTTTGACAGGTCTTGAAGCCTTATCAGCTGGTCTGCCCATCCTTGTAAGTGGAAACTCTGGATTTGGAGTCGCACTAAGTGAAGTATCTTTCGGTTCATACGTTGTGATCGATTCAGAGGATTCCGATACATGGGCCAAAGCTATCAAGGATGTCCGGAAGAAAAAGCGGTTTAACCGTCTTGACGAGTCCAAAGTATTGCGTGCCTCATACGAGAAGAAGTACAATTGGGAAACCCAAACTAAATCTCTCATTAGTAACATGGCCCGCATAACTGAAGATTCTCCTGCAGCTGATCCGAGCTCTTCAAGAAAAACAGCACTGACTCAACAAACGGAAGTCTTGAGTGAGCGTCTTCCAGATTCTCCTATAACTTGCCAGAGCTCAACAAGAAGAACACTACTGACTCAACAAACGGAAGTCATGACTTGGCGTCTTTCAGGTACCGTACCCATCGTAATAAAAATAGACAGCGTTACATTTCAAAAGGCAAGAAGCAGGGATCCTGTGCAACAAGAGGAAGCCAAGCGGCTTATAATGAGGGAAATGACAAAATGCTTTCTTGAGACACATGCATCTCAAGTCCCAGCGGACATCTACCCTCTCTGCCTTGATTACTATTTAAAAGGAGTACTCGACTTAATAGTAAAAGATGCAGACGAGGGAAGTTTACTGATAACAGTGGAGTGCAGGACTCTGGAAATTCTCGAACGTCTGTGGGCAGACTACTGTTCTGGGAACTTGAATGCAGAAGCCGAAGAACGCCTTTTGACAGATGACATAAAGAAACAATTTGATGTGGAATCCATTAAGCTGGAAACAACAATTTTGGAAAAAGATTACTTGGCTTGCAAACTGTTCCTAATGGACAAGTCAAAAGTGAACCAGTACTCATCATTGAAGGAAGATGAATCACTGCCCCAAGACCATACTGACCAAGCTGCTGATGAGACTCAGACTCAAACCGCTGAAAAGGCTGAACCAATGACAGTGCGCTTTGCAGTTAATTACAGTGGCAACGTTCAATACAAACAGTCAGATAATGGTGTTCACGAAGAAGAAGAAGTAAAAGAAAGTCAACAACTACTGTCTGAAGAAGAAACGAGTGATGTTCCAGTTGATGAACTACCTCAGTACTTTCAGCATCTAAAACTAATTCACGACCCAACGCCAACAGAAGGAAGTGAAAATAGTTTACGGTTAGCAGTGAAGTGCAGCAATCTAGAAGGACTGGAACGCCTGTGGGACGACTATCGCTCTGGGCGCTTAAATAAAATAGCGGAGAAATACCTCGTGACAGATGAAATTAAGAGGAGATTTCATGTGGAGTCTGTAAATTTAGCAACAACTATTCAAGAAGAAGATTACTTGGCATGCAAAGAGTTTCTGTCGAGTAAACCAAAAAGCAATGCTAGTTCACCCGTTAAGGCTTCTGGGGAAACCTCGACTCAAACTTCTACGGAAACTCAGACCCAGATTGCTGTCAAGCGTGGGACTTTAGAGGAAATACAGATTCAACCTGCTGGGGAAAGCCAGAGTCAGGTGGTTGACAAAAGTGAGATCTTCGTTTCAGGGAATACTCGCATTCCATCTCCGAACGAAACTCGTACTTTGCCTGTGGAAGGCACAGAGACCCAAGTTACTGCAGAAGCTCAGACTCCATCGGCTGAGAAAAGTAGGACGAGGACTGGGGAAGCTTCAGAATCTGGGACAAGAGCTGCGGAAGCTAGAGAAACTCAAACTACTGGCGTGAGCCAGATTCCATCTGCTGGAAAAACTCAGACCCAAGCTACTACTGAAAGTACGAACCTTGCTAGAGGCGAAACTCAGATTCAACCTTCCAAAGAAACTTACACCCATACAAAGACTGCTGAGTACAAGTGCACCCTGCCTACAGAAGATTTTGATATCGAATTTCCCGGGACACACGAGACTAAAACTACGGAAGAAAAAAGCAATGCTAGTTCACCCGTTAAGACTTCTGGGGAAACCGCGACTCAAACTTCTACGGAAACTCAGACCCAGATTGCTGTCAAACGTGGGACTTTAGAGGAAAGACAGATTCAACCTGCTGGGGTAAGCCAGAGTCAGGTGGTTGACAAAAGTGAGATCTTCGTTTCAGGGAATACTCGCATTCCATCTCCGAACGAAACTCGTACTTTGACTGTGGAAGGCACAGAGACCCAAGTTACTGCAGAAGCTCAGACTCCATCGGCTGAGAAAACTAGGACGAGGACTGGGGAAGCTACAGAAACTGGGACAAGAGCTGTGGAAGCTGGAGAAACTCAAAGTACTGGTGTGAGCCAGATTCCATCTGCTGGAAAAACTCAGACCCAGGCTACTACTGAAAGTACGAACCTTGCAAGAGGCGAAACTCAGATTCAACCTTCCAAAGAAACCTACACCCATACAAAGACTGCTGAGTACAAGTGCACCCTGCCTACAAAAGATTTTGATATCGAATTTCCCGAGACATACAAGACTAAAACTACGGAAGAAAATGTGACAAAAGACTCGACACATCCAGGTAATAATTCTTCGGCGCTGTCTTGTCAGTCTCTTACTCGGGTTCCTATAGCAGATAAGATTCACTTTGCTGTGGAAAGGCTTCACGATGCTGCACTTGAGCAGCAGATCGCAGTTGAAAAGTTTTCTGGTTCAGCATTGGACATTGACGCTTCAAGTCCACATTCTTCATGCAAGGCACTTAAGATCAAAACCACCTTGACCAGTTTAAATTTGAGTGGCAAAAGGATTAGTGATCATGATGTGCGTTCCCTCTCCGAGGATCTTAAAGTCAACAATACGTTGACTCTTCTGATTTTGAGCCACAACAACATTGGTGAAAGTGGTGCGGCTCATCTCTCTGAAGCTCTAAAAGTGAATAGAGCGTTGGGTAGTCTGGGTTTGAGTTGGAACAAAATTGGTGATAGTGGTGCGGCTCATCTCTCTGAAGCCCTAAAAGTAAATGGAACATTGACTAATCTGAATGTGAGTTCGAACAACATTGGTGAAAGTGGTGCGGGTCATCTCTCTGAAGCCCTTAAAGTGAATGGAAAATTGACTAATCTGAATGTGGGAAGCAACAAAATTGGTGATAGTGGTGCGGCTCATCTCTCTGAAGCTCTAACAGTGAATAGAACGTTGGTTTGTCTGGGTGTGAGTGGGAACAACATTGGCGATAGTGGCGCGGCTCATCTCTCTGAAGCTCTAAAAGCGAATAAAAGGTTGAGACTTCTTTATGTGGCAGACAACAAAATTGGTGATAGTGGTGCGGCTCATCTCTCTAAAGCCCTAAAAGTGAATGGAACATTGACTAATCTGAATGTGAGTTCGAACAACATTGGTGAAAGTGGTGCGGGTCATCTCTCTGAAGCCCTTAAAGTGAATGGAAAATTGACTAATCTGAATGTGGGAAGCAACAAAATTGGTGATAGTGGTGCGGCTCATCTCTCTGAAGCTCTAACAGTGAATGGAACATTGACTAATCTGAATGTGAGTTCGAACAACATTGGTGAAAGTGGGGCGGGTCATCTCTCTGAAGCCCTTAAAGTGAATGGAACATTGACTAATCTGAATGTGGGAAGCAACAAAATTGGTGATAGTGGTGCGGCTCATCTCTCTGAAGCTCTAACAGTGAATAGAACGTTGGTTTATCTGGATGTGAGTGGGAACAAAATTGGTGATAGTGGCGCGGCTAATCTCTCTGAAGCTCTAAAAGTAAATAGAACGCTGACTGCTCTGGACAGGGGAAAGGGCAGCATTGGTCATGCGTGTCATCTGATTGGGCTTACTCTCGAGCGCAACGTTCGCAGTGAAAAACAAATATCATTAAATGAATGA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20694	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF20706	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052201	Family	Leucine-rich repeat-containing regulator of pluripotency	Interproscan
IPR049341	Domain	TRADD-like N-terminal domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24111	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan