Detailed information of aacu_s0004.g141.t1 in Acropora acuminata

Genomic Location: sc0000004_pilon:2975431...3007480
NR annotation: XP_044174480.1, uncharacterized protein LOC114956221 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9R0G6Cartilage oligomeric matrix protein OS=Mus musculus OX=10090 GN=Comp PE=1 SV=2
P49747Cartilage oligomeric matrix protein OS=Homo sapiens OX=9606 GN=COMP PE=1 SV=2
P35444Cartilage oligomeric matrix protein OS=Rattus norvegicus OX=10116 GN=Comp PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF12947EGF_3EGF domainDomainInterproscan
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF05735TSP_CThrombospondin C-terminal regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR008859DomainThrombospondin, C-terminalInterproscan
IPR017897RepeatThrombospondin, type 3 repeatInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR024731DomainEGF domainInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04659THBS2S; thrombospondin 2/3/4/5-Glycosaminoglycan binding proteinsko00536deepkoala

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