Gene detail

Detailed information of aacu_s0008.g115.t2 in Acropora acuminata

Genomic Location: sc0000008_pilon:2148405...2164355
NR annotation: XP_044170246.1, DEP domain-containing protein 1B-like [Acropora millepora]
Species abbreviation AACUM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aacu_s0008.g115.t2

CGGAGAAAGGACATGACGACAATTGCGTTACGTACTCTGGTTGCAGGTACAATAGCTTGTCTCATGACAGCTTGCGTGGCAGGTGTGCTCTACGACGAAAGTCTTTACGATTCAGTAGTTGATATTCCTAGCACCACAGTTGCAGCCATAAATGCTACGACTGCTCCATGATGCGACGGttttttttttcttttttttttAGTGTAGATAGGAGAATTTAAATAAGTTTTGGTTTTCAAAAGGTGCTCGATTTCAAAATGGCCTCTGTAGTGGGTTAGTGCGCTGTTGTGCAAAGAAAGCAGAAAGAAGTGAAAAGACTTGCCTCTTGTGTTTCAGGGTGAAAAGAATTGATAATCCAAATCGTGATGAAAAGAAGCAGCAGTGATTTCAGTAGGGGACCATTCTCGGCTACGAAATTATGGAATGAGGTTGTACGACAGATGAAATACAATGTTGCCGTCAAACGGAGGAGATGGCGTATGAGAATGTTTGAAGATGTTTTTGTCGCTTCAGAGGCCATAGATTGGCTTCATGGCTTTCTGAAAGAAAGCCGCAATTTTTGCGACGATGTAACACGAGAACAGGCCGTTCAACTATGCAGTAAATTTCTCAAAAATGGAATTATATCGGACGCAATTCGCGGAGAACAATATAATGGAACGTTTGAAGACAACGGTCATCTTTATCGTTTTACAGACAAAACGCGATATTCGCCTTATAAGACTACGCGATCTCCGAATAAGGGAGAGACATTGACGCAGAAAATTAACATGAGAACGGGGTTACCACAAACAGGATGCACTATTTACCAGGATGAAAAAAATAGTGATTTAAAAGTGGAAGACCGAGCGGCATCTCACTCGGTGTCAACTCCATCTCTAAGAAGCAAAGCCTATAATCTCAGACCGAAGCCACTTTCAACCAGCCGAACACCTCTCGTCAATAAATTAAATATTCTGAGTGCTTCAAAACTTGATTCTAGAGGATCCTTGAAAAGTACAGGTGATGTCAAACGGAGGAGAAGTAGTCTACGCAACAGCTTGGAGGAAGTGATCATGAACCCAGCGGCTTTTATGGCACACAATCGACGCTCGCTTACAGAAAACGAAATCAATCAAGTTTGGTGGAGTATCGCCACTGTTCGGTTGAAAAGATTGATGGACTTGGATGATGAAGTTGTCACATCTTTGAGATTTGAGGGCTATGATATCAGTTGTGTTCAATCTGGTGTACAGAATCAGAGGATTCCCACAGCCATTGAAGTCTTACCACAGTGGCTGATATCTGCCATGAAATGTCTCATACACTGGCCAAATTGGGATTACAGTGAGCAGAGTTTTCCAAAGTATCCAGGATTTGAGCGAGATGTGTTCAAAGCTATTGTGCAGTTCTTTGAAGAAGAGACATGTCCTCTTGTTCCAAAGCACATCCTGCAGGTTTTTAAGAAAACAGTTGATTTTATTTCCAAGTGTAAACTAACTGCAGTGCGGTCTTTACAATACTGCTGTTTGTTGATCCCAGTAAGGAACAGGGAGCTATTTAAAGTGTTGCTGAAATTTATGGTGCGACTCTTGGATAATCATACCATCTCTCTGAGTGATGATTTACCTTCTACAGAAACGCTCATCCAGTCATTTAGCTGGGCAATATTTGGTGCAACAGCAGACATGGACGTCATCAGGCTCATGTATTTCATGTTGGAGAAGTTTCCAGAGTTTTTCAAGAGTCCAGAAGGGCTTGAATTTCAAGTACAACAGAGACTATTATTCCTTAGAAACTGTCGAGAAAATAAGTTCACTATGCCCTCTGAAAGTCCTCTTGTGTCCTTCTGTGAAAGAGTCACGCCTCAGGAATACCAAGAACAAACCTTGATTACATCAGAGCACTCTCTAAAGGACCTCCTTAATAAAATTGCTGAAGATGAGAGCCTTAGTTCAAAGGAGAGAAGGAAGCAGCTTAAACAGTTTGAGAAGTCATATCCCGAGATTTATAAAGCCAAATTTCCTGGAGACAACTCGTCAACGAGTTCCCAAGCCTCACAAAGTTCAGAGAGGGTGAAACAGGTCGTGAAACCACTGAATATACTTAAGAATTTGCGGTAGCAGAGCATAGAGGAATAAGAAATGTGGGTAACAACAGAATGGTGGACTGGCAAGCACATGGAATGTTATGTCTAGAAGTTGGTGATCCCTGTGATCATTTGTCTGGAAAAGAAATCCATGCTTTTATTTTCATTAATTTTGTAAGCTACTGTTGTGATTGTAAATCTAACAAATTTTCTGACAATTGAAAGTTAGGTAAATTCCATAAACAGAAAGTCCTATTTTAAATTGCTTTTATCTGTCATTTGATTTTAATGAACATAGACAGACTTGGAGAGCAAGCACTGCTCTATTGCATGACTGTCACTTTCATTTTATTCTACCAATAAAATTTTATTAAATATTATGTAGAACAAGATGAAATTTTTTTGTCAAGAGACAATACTGTATATGTATTATGTAACAATTTATCTAAATAAAAAGAGAAACTGGAAATAATTTTTATCGTTGGACAAGATGAGGAATTTGTGTGTGCATAACCAATTCAGTAAACAATATGTACAACAAGTATTGACTCCAATATTGCAGTCGTGTGAAAATTACCTTATATCCCTGTTTAGGTGTTGGTGTTTCCTTATCAAAATATTGTTTATAATTGGGAAACTCCAGCTTGACTGCTAGATATGCAATATCTTTAGAACTGAAGTAATACTCAATATTTTACCTAAGACCTTACGGCGAGGAGAAAAGTATTATTGGCAGTGTTGCAAAATGGCCCATCAGTTGAAACTGAATAGAGGAAGATTTGAATTTTACGAAAAATATATATCTCAACAACTATTTCATCGTTGACAAAAGATGGTCTGGACATGGGCATGCAGGGTTTTAGTTTTGTTCTTATCAAACAGTATATGTTTAGCTTTGTTCACAATTCATAACTTCTGTAGAATGTAATTCAGTACCATGATTAAGACCAATAAAGAATGCGTTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BH88	DEP domain-containing protein 1B OS=Mus musculus OX=10090 GN=Depdc1b PE=2 SV=1
Q8WUY9	DEP domain-containing protein 1B OS=Homo sapiens OX=9606 GN=DEPDC1B PE=1 SV=2
Q4R623	DEP domain-containing protein 1B OS=Macaca fascicularis OX=9541 GN=DEPDC1B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005679 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16206 all species →	DEP DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aacu_s0008.g115.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.