Detailed information of aacu_s0011.g20.t2 in Acropora acuminata

Genomic Location: sc0000011_pilon:298196...320430
NR annotation: XP_015780253.1, PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform X3 [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3MSQ8Probable ATP-dependent RNA helicase DDX4 OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Q61496ATP-dependent RNA helicase DDX4 OS=Mus musculus OX=10090 GN=Ddx4 PE=1 SV=2
Q91372Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR014014DomainRNA helicase, DEAD-box type, Q motifInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007276Biological Processgamete generationInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0043186Cellular ComponentP granuleInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13982DDX4, VASA; probable ATP-dependent RNA helicase DDX4EC:5.6.2.7
Chromosome and associated proteinsko03036deepkoala

TOP