Gene detail

Detailed information of aacu_s0018.g133.t1 in Acropora acuminata

Genomic Location: sc0000018_pilon:1799756...1807890
NR annotation: XP_029188652.1, LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase ddx6 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0018.g133.t1

CTTAATTAAGGATTTGTGAAATTTCAAGAGACTGGAAACCAGCTTGTCACGAATGTATGTTTGAAAGCGAAAGCAGAACTGGAGAAAATTTACGGTTGTTGGCTTGCGAAAATAATCCTCATCCATCGCACTGGAATTCATTATTTGGAAGACATTGCGTCCTCATAGGTTTAAGACAAATATTTTTCTACAGTTGGAGCTATTCTTTTTGTAGATATCGCCAGGGGAAAGCTGAAATTTCAAGCTGTTTGTCTCGTCAGCAATGGCAACAACGAAAACGGAAGCAGTGCCATCCTCTCTGCGGTCTGCAGGAAGGGAAGGATCTGAAGGTGATTCATGGAAGGCGAATTTGAAAGCTCCCGCAAAGGATAGACGCATACAAACTACTGATGTTACAGCGACAAAGGGAAACGAATTTGAAGACTATCTTCTTAAGAGGGAGTTACTGATGGGAATATTTGAGAAAGGATATGAGAAGCCTTCCCCCATACAAGAGGAGAGCATTCCTGTAGCTCTTGCTGGGAAAAACATTCTTGCCAGAGCCAAAAATGGCACTGGGAAAACAGCTGCCTATCTGATACCTCTCCTAGAGAAATGTGATTCCAAAAAGTCACACATTCAAGCTCTTGTCCTTGTGCCAACACGTGAGCTCGCTCTTCAGACATCACAGATATGCAAAGAACTTGGCAAACACTTGGGAGTTCAAGTTATGGTAACCACAGGAGGAACAAGTCTCAAAGATGATATTATGAGACTCTATAGTGATGTTCACATCATCATTGCCACACCTGGGCGCATACTAGATTTGATGAGAAAAGGTGTGGCTAAAGTGGACAGCTGTCAAATTCTTGTTATGGATGAGGCTGATAAACTACTGTCCATGGACTTTAAAGGCTTTTTGGAAGACATAATCAGCTTCTTCCCTCCCAGCCGACAGATACTTCTTTACTCTGCTACTTTTCCAGTTTCAGTGAAAGAATTCAAGGACAAATATTTGGAAAAGGCCTATGAAATTAATCTGATGGAAGAGCTGACATTGAAAGGAATTACCCAGTATTATGTCTTCCTTGAGGAAAGACAGAAAGTGCATTGCCTGAACACTCTGTTCTCTAAGCTTCAAGTGAATCAGGCTATAATTTTTTGCAACTCAGTCCAGCGTGTGGAACTGCTGGCAAAAAAAATTACAGATCTTGGTTATTCATGCTACTATATCCATGCTCGAATGGAACAAAGTCACCGAAACAAGGTGTTCCATGACTTCAGACAAGGGGAGACAAGAACTTTAGTTTCCTCAGATTTATTCACTCGTGGAATTGACATACAGTCAGTTAACGTTGTCATCAACTTTGACTTTCCAAAGAATTCAGAGACGTATCTGCATAGAATTGGTCGGTCAGGCCGCTTTGGACATCTTGGTCTTGCCATAAACCTCATCACTGAGGAAAATAAATTTGATTTATTCAGGATTGAGAAGGAATTGAAGACAGATATAAAACCATTCCCAGCAGTTGTGGACAAAAAACTCTATGTTGCAGAGTTCCAGCAACAACAAGAGGAAGACTAGGTGTAGTATAATTCTGGTAGGAAAAATTGCAAGTGTGAAAACTAGAAGGAAGGCATTAGTATACGTTATAGTAGGTGTCAAGTTTCTCAGAAATGTTTGGAGTGAAGATTTTTTGAGCAAGTTGTTTGGGACAAAAGTGGCATTAAGACTTAAACAAATTACAGTTAATTTAAATGCTTTCATAGATGTTGTATTTGGCATGTGCCATTTTTTGTACCAGGATGGTGAAAATTGTCTGGTAGTTATGTTCATGGACCTTCCCAAAGATTTGAACCTTAAAATATTGCAGAACTAAGGTATAAAAGAATATAAATTTAATGTAAAGCTGGAAATTTGCACCGAGGTGGACAGTTCATCCACATAAAGGTTCTTTTAAACATTTGCTGACAGTGATCATTTTGTCATCCACTTAACTTTTGATTGGTAAAGTGTCTTAGGAATTTCAAGCATTTCCTTGGCATTTTTGTCTGCAAGACATTACTAGGTCGTTAGTTGAGTGTAATGTTGCAGATTTAATTTTCTATTGTTATGTTTTTGTGAAGTCACCTTGCACTGTTGATCCTTACTCTTGTATTGTAATTAGACAACTTTTCCTACCAGAGGTACAGCAAGTGCTTTGAAGGAGCAAGGCCTGCCTTGAAAATGTACACCCAATGAAGACGTAAAGTATTTATTCCTTTCTGATATTCAGAAGGATCACATTGTTTGCTCTAGATttgtgctgagctgtgttgtgttgtgttgtAAGTAGGTCTAGCCTTTTCACTATCACCCTGCTATAAGATCATGATTAACACAAATTGTTGTTACTTAAGGCTTTTGCCACTGTGTGTTAGTGAGCTCCACAAATCATACCTACAATACTTCTTTGTCCAGAAGAGGATGCCTTTGGATGCTCCTTAAACATTTGCGTTAAATGTTGCTGTGGTGGTAGTACCAGTACGTTTTTATGTTGCAATCCATTGTCATTCTATCCTTGTAGTTTATCACTGGAATTCTGTTGTAGTCTCCTTTGTTTGATATTGTAGGACCACCTTTCTTTATTTTTCTGTGGCTTAAAGCTGGTGTTCATCCACTCTCTATTTCTAATTTCTGAGGGCTACAAATTGCTGAGGATTGTGTTGTTCCAATGTTAACAATCTTGGTCTTGTAGCAGAGGTGGTTACTAACGGTCCAAAAAGAAGGCtgtgtttgtttgtttgtttttgttttgttttcttttcttGTACAAGTGTATACTCAAAGATCTCCATGCCTCTAGCAAAGTGGTTTATTTAGGATGTGTAACATAGAGAAGGGCAACAATGGATTCATGTAGGTACAAGAAAGCCTAGGCTCGTCTTAATTCATTATTTGAACAACAGCGTGTGTATAATAATGTCCATTTTGAATG

Protein

Uniprot

Uniprot term	Description
Q54E49	Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum OX=44689 GN=ddx6 PE=3 SV=1
Q7XMK8	DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0533000 PE=2 SV=1
Q8RXK6	DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana OX=3702 GN=RH8 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47960	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0010494	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0033962	Biological Process	P-body assembly	Interproscan
GO:0034063	Biological Process	stress granule assembly	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12614	DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala