Detailed information of aacu_s0019.g30.t3 in Acropora acuminata

Genomic Location: sc0000019_pilon:603001...619233
NR annotation: XP_015758509.1, PREDICTED: exosome complex component CSL4-like, partial [Acropora digitifera]
Species abbreviation AACUM · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y3B2Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1
Q9DAA6Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006120 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14382
all species →		ECR1_NExosome complex exonuclease RRP4 N-terminal regionDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025721
all species →		DomainExosome complex component, N-terminal domainInterproscan
IPR039771
all species →		FamilyExosome complex component Csl4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12686
all species →		3'-5' EXORIBONUCLEASE CSL4-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000176
all species →		Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000178
all species →		Cellular Componentexosome (RNase complex)Interproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for aacu_s0019.g30.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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