Gene detail

Detailed information of aacu_s0021.g91.t1 in Acropora acuminata

Genomic Location: sc0000021_pilon:1587304...1594406
NR annotation: XP_015773826.1, PREDICTED: probable ATP-dependent RNA helicase DDX59 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0021.g91.t1

CGCATGTAAGAAAAATCGAGAAAGACTGGGACTGAAATGTTGATCAAAATGGAGGCAATGTTCATTCCTCGATCTTTGAAGAGAAAGGAGACTGCAAAATCTGATTGCTCGAGAACTTTTATCCGTAAGAGAAATTTGCAGACTGAAAAATTTCAGTTGATTGACGAACGGAGTAAGGATAGTGTGCAGGAAACGGAGCCGAGAAATACAGAGATTTCAACGTCAACTCGACGTCCTTTGGATGAACCAAATTTAAGTgaagagggaaatgaccatgaagaagaagaagaagaGATAGTGTCTTACAGTAAAAAACAGAGATGGCCAACCCCTGGAGAGCCAGTGTGTGTTGTTTGTGGACGATATGGAGCTTATATTGTGGATCAAACAGACAAGGACGTCTGTAGTTTGGAATGCAAAGCAAGGCACCTTAAGGATGTCACAGCGAAGAAAGCTAAGGAACTATTAAATGAAAGATCGTCCAGTTGTAATCAATCACTTCAAGGGATTTCCATTACTGAAACCACGACGGATTCCTTAGATTCAATGAATTCAAGCACACAAATGTCAATGCTCTTGTTAGATGATGGAAAATCAAAATTGTATTACAAGGAACACCCTTTCATCAGAGGGCTGTCACTTAATCAAGTCGATGATATTCGAATAAATCTCAACATAAGAGTTAAAGGAGAGGAAGTTAGTAAACCAATTCTTGAGTTTCAGCATTGCCAGTTCACAGAGACATTAAATGAAAACCTTGCACAGTTTGGATATTTGACACCAACTCCAGTTCAAATGCAGGTGATACCTAGTGCTTTGAGTTTACGGGATGTGATGGCTTGTGCCCAGACTGGTTCAGGGAAGACAGCTGCTTTTCTACTGCCCATGATTCAAATCATTTATTCTGAGATTGACTGGGAATTGCAGAACAAGAAATCAATCAATACCGAGAGTCCAAGAGGGCTAATTATGGCACCAACAAGGGAACTCTGTATGCAGATTGAGAAGCAAGCCAAAGAACTTATGAAGGGTCTACCACATATGAAAACAGCTTTACTTGTTGGTGGTCTTCCATTGCCTCCTCAGCTTCATCGACTGAGATCAGGAGTACAGATTGTTGTCGCAACTCCAGGACGATTGCAAGAGATTGTTGCACAATCTGGTGTTGACCTGTCATTCATCAAGTGCTTTGTGTTGGATGAAGTTGATGTCATGCTGCAAATGGGATTTGATTGTCAAGTTCAAGATATCATTGAAAAGTTGCCAGCAAGGAAACAAACCTTGATGTTTTCAGCTACTATTCCATCATCTATTGAAAGCATGGCTACTAAACTGCTTATTTACCCTGTGTACACATTAGTTGGGTCTCCGAGTGCACCCACTGATTCAGTCAAACAGGTTGTTTTGTGGGTTGAAGACAAATCCAAAAAGAAACGCTTGTTTTCAATTCTTCAAGACTCTAAGCATTTCAGACCACCCATTGTTGTATTTGTGGATTCCAAGATGGGAGCTGACCTACTAGCTGAGGCAGTCTGTGAGGTTTGTGAGATACATTGCCTTCCAATGCATGGTGATAAGTTACAGAGTGAAAGAAGCAAGACATTGGAGTCATTCCAGGCTGGTGACTGTCCTGTTCTTGTCTGTACGTCTTTACTTGGAAGAGGAATTGATCTTCCCAATGTTAGCCAGGTGATCAATTTTGACATGCCTTCATCAGTTGAAGAGTACATTCACCAAGTGGGACGAGCAGGAAGATTAGGAAAAACTGGCTGGGCTTTGACTTTTATCAATAATACAAACAAAAATGTATTTCTTGGTCTAGTGGACAGTCTGCAGCCATTAGGCGTAAAATTACCTCAAGAGCTTCTGAATTCACCTTACTTACAACAGCAAAGACAGCGTACAAAGGATACACTAAGAAAAAGAAAGCACAAAGATACTGTAACACACGAAAATCTCATGGACTTGATAAAGAAGAACTCAAGAAGGAAAAAAGCGCCTTAGCAACTTGCTTGCGGGGACATTCTCGGTATTACTCATTTGCGTGTGTGTCTACAGAAAACAAACGAAAATAAAATAACGGCTTAGCA

Protein

Uniprot

Uniprot term	Description
Q9DBN9	Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus OX=10090 GN=Ddx59 PE=1 SV=1
Q5T1V6	Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens OX=9606 GN=DDX59 PE=1 SV=1
Q66HG7	Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus OX=10116 GN=Ddx59 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF13368	Toprim_C_rpt	Topoisomerase C-terminal repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR025589	Repeat	Topoisomerase C-terminal repeat	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19466	DDX59; ATP-dependent RNA helicase DDX59	EC:5.6.2.7	Enzymes with EC numbers	-	deepkoala