Gene detail

Detailed information of aacu_s0021.g96.t1 in Acropora acuminata

Genomic Location: sc0000021_pilon:1633243...1642676
NR annotation: XP_029211579.1, RNA-binding protein Musashi homolog 2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0021.g96.t1

CCGGGACATGAGTTTGCTCCAGCGTTGGTAGTTCTGTCTCGTCTGTTAGTTGTAGCAGCACAGAAGTTCACTTCTTTTCCGAATGATTAGGCCAAAAATGGTTCGCGGAACAAACCGAGGAGATGACTTTGGGAAGATCTTCGTCGGTGGATTGTCCACAGAAACGACAAAAGAAACCTTGCTGGAGTACTTTTCCACATTTGGTGAAGTTGCAGATTGCATTGTAATGAAGGATAGTGTTTCCAAGCGTTCAAGGGGTTTCGGATTCGTCACCTTTTCTGATCCATCTTCCGTCGACAACGTTTGTCAAAAGCCTGAACACATTCTTGACAATAAAAAGATTGACCCAAAGCGTGCAGTACCGAGAGGACCAGGACAGCAAGCTGTTATTGCCCAGCAAAACTCTGGTGCTCCAGTCGTTAAAGACTCAGGAGGCAATGAAAACAAGATTTTTGTTGGTGGATTGGGAGGAAACACGACTGAGGAAGAATTAAAAAGATTCTTTTCTGTATTTGGCAAGGTTGTCCATGTGAAGCTGATGTATGACAAAGAGACAAGCAGGATGCGAGGCTTTGGTTTTGTAACATTTGACTCAAGTGAAGCAGTAGAGGAAGCAGTCCGTACACGTTATCATGACTTCAATGGAAAAACGGTGGAAGCCAAAAAAGCTGAGCAGCAGCAGCCTCGTGGTATGGGTCAAGGTGGAAACATGGGCATGGGAGGAGCACAGATGAATGCTGGCTATGGAAGAGGACAGTTTGGCTACCCTCAACAACCAGGTATGGTGCCACCATCAGCAGCCATGGGGAGAGGTTATCCAGGTTATGGTGCCATGGCCCCAGGATACCCCGGTGCTAATCCTGTGGTTGGAGCAGCATATGGATATGGGATGGGAGGCCAGGGAGTTACAGGCTATGGAGTTGATCAGTCATCAATGTATGGTGCTCAACCTGGCTCAGCAGGTGCTGGAGCTTTTGCTGCTGGTTATGGCTCGGCCCCAACCTCCGCTGCAGCATCCATGGCTGGTACATCTGCATATGCTGAATATGCACAGATGTCAGCAGCATCTCAAGGAGCAATGGCAGGTGGAGCCCAGCCTCGCTTGGACACCCCTGCAGCCCCAGATTACTCTGCTTATGGACTGGGTAACTATCAACAGCAAGAGTCTAGTTATGGCCCGGCTAGATCATCTTTCTCGTCCGACGCAGGCAGCTATGGAAATTATGGCGCTGCAGCTGAACAGGCGAACTATGGCACCTCATATCCTCATGGGGGTGGAGGAGAGCCATTCGGCAGGGGAGGAGGAAATGTGTCACGTGGTTACCACCCGTACGGACGCTGAAGTTATTTTATGCTATTGACTTTTGTTTTCTGTTAACTGCGAAAAAAAGGAAAAGACATGTTCGGCTCATGCAACGCGAGTAATTTTTATTCGAATGGAGTAAGGAGTTGTTTTTAAATAGTCGTACATTTCAGTACCGCGATTTCCTGCGCTGACCTTTTGTTTCACATTGTCATACTTATTATTAAGACTTAATTGATGTAGAGATGAAATACTTCGGGATACCTTAAGAGTGATTGAATAGAGCATCTTTTTTCTCTCAGTGATGGTAGTCACGTTTTTAGAAACCATAATTAGTGTGCAACTTCATGTCCTTTTTCCCGTACGTACAACTGTTGCCAATAACTTGAACTCGCGCATCGTCAACACAGTAGTCTGCATCTGCAACCATCTGAAAGGGGTGAAGTTGAATTCAATTTGCCTTCCTTCTGAATCATAACACTTTTATTGCTCCATGAATGCGAAGCCTTTCTAGGGTCAGCTTACCGTGGTCAGGCGTTGCTTTTGGGGAATGAAAATCAGCGAACAGAGGGAAAGGCACGCTTTTGGCATAAAACAAAAGGTACCCTGTGATGGTAGAAGCTGGCATCCTGTGTAAGCGCGAGAAATTGTCCATTTGTGGCATTGAGTTTATTATCGCGAGACTCGGAGCGCCCCTTTGCCTGGTTTCTCGACCTAGGTGGGATGCTGATGAATCTTATTAATCTTGTTACACTTTTAAACCTCTTCTGTTAAATCTTAGCAATTAGCGGTTACTTTTTGACCTTTTCTATTGGGCGCCGTAAACACTTGACGATCTAGTACTGCTGTGCGAAGAAAGTTGGTTTTCTTACCTGCAATAACTCGTTTGTTTGGGTGATGGCAATTCATTAAAACCGCGTAGAACCAGATGAATGGTTGATGTCTCTGTAAACTACAGTTAGCTGTTGCATTTATTTAGACGTTAAGCTTATTGGCTTCAACGGAGAACATAGACCCAatcttttaaataaagtagaaatccctaa

Protein

Uniprot

Uniprot term	Description
G5EFS2	RNA-binding protein Musashi homolog 1 OS=Caenorhabditis elegans OX=6239 GN=msi-1 PE=1 SV=1
Q96DH6	RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1
Q920Q6	RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14411	MSI; RNA-binding protein Musashi	-	Messenger RNA biogenesis	ko03019	deepkoala