Gene detail

Detailed information of aacu_s0023.g144.t1 in Acropora acuminata

Genomic Location: sc0000023_pilon:1942799...1951485
NR annotation: XP_015760144.1, PREDICTED: GTP-binding protein ypt2-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0023.g144.t1

TCTATTTGCAAAGTCGCTCTGTCGTTGTCCTTGCACCAGAGTTATGGGAGAAAAAGACTACGAACTAACGTACAAAATACTTATTCTTGGAGACAGCGGCGTCGGGAAAACTTGCCTGATCTTTAGATTTATAGAGGATATATTTTCAGACTCGTATATCTCGACAATTGGTATTGACTGTAGAAGCAGAACTGTGGACCTAGATGGCAAGAGAGTGAGGCTTCAAATTTGGGATACTGCTGGTCAAGAAAGATTCAGGACACTTACAAGTGCTTACTTTAGAGGGGCTATGGGTATAGTTTTAGTGTATGATATCACAACGGAGGACTCATTCAAAAATATAACTCAATGGCTGCAAAATATTGACGAGAATGCTTCACGTAATGTTTGTAAAATTCTGGTTGGGAACAAGTTGGATTGTGAAGATGAAAGAGCAATCGACAAATTCAGGGGATTATCAATGAGTGAAAATGCTGAATTAGAATTTTTCGAAACCAGTGCCCGAACAGGAGAAGGTGTATCAGAAGCATTTATGGCAGTTGCACGGCAGATCAAAGAATTTCAAGACAGAAAGGGAGCAAGGTCGTTAGATGAAGATACTACAATTCCTCTCAACCCATCACATGGATCACCTCAAATGCAGTCCTCTTGTTGTCGCTGACAGATCATGGAGAACACCTAACATCTATTATATTGCATGCCAACCATGTTAAAAATCAGTATGTGGATCAATGGAAAAATATCATAAATACAGGGTATGTTTGATGAAAAGAGGTAAatcctcagaagaaggacctgtcaagctcacagataatgtaaaacaaagaaaacaagagactattgaaaattaccaaacaccagcacaagctaaaaaaaaaacaacaaaaaaacagtaagggttgttacacctaggtaGNNNNNNNNNNNNNccccccccccccccccccGGCCCTAAAAAGAAAAAGAAAAAAATAAATTTCACTTTATTTCAAGACTACAGGGAGCCCAATCGTAATGGCACCTGTTAGCAACATCAGtaaagagggtcagatgggggtattggaatctgaggtgtctgccaaatttttggccatttctcattcaacagttagcttaaataaatctcagttaatttttttctcctcaattttatattcgcctgtggctcgtggttccacagccacaatgttatgatacaatttatcatcattaagaggacagacgcataaaaggctgacgtcaatttgcaaactcgaattgttgggatggaaatagggtcttgtcacgcaacttgtagtgcaagctttgtaacgcataatgtataataggacccaatggtcccgtcactcgctaattcgtgttcaaaatggcctattactgggtaattttctcaggatattcagacaatttaccaatctcagctaaccgttactcaaagattctcagctatcagttaaaagacacatcgtttctcagctattagttgacattttgcctgaatctcagctatcagttaattaagtcaccatccatacccTCAGTAAAGTGAACCCTTAAAAGTGAGAGTTACTGAACGAATGCAAAAGCACTAGAATTTTCATGTGATTATCAACTTATAGTACACCCTCAATCTTCTTTTTCTTGTGACCTTCTGGTGCTTCTAAATGCAATTTCATCAATGTTGTGTACGCAATCACGTACCCAGCACTGAGTACGCGGAGATTGGCGATGTCAGCTGCCCACGCGCGACATTATAGTGTCCTTGTTTTATGACCATTGCAACTGCCACGTATCTCTGATTGGGCACTAGCTACTGTCCCTGACTAATCCCCAGGGAATTGTCTGTAAAAAGTGAAATTTCGGCACCCAGTGTAAATTTTTTATTTTTCAAGAAACAGTGCGTGGGTAAGCTTCTTAATAATCAGACTAAGGCGCTTCAGATAAGTTAAGGTGATGAACGTATGTTTGGTTTCACGCTAAGTGTATCACTCTCCAACCTGGGTACTACCCATTGAACAAATAGCACAATTTAATCGTCCGTAACTCATTTTCTCCTCTTCCcctggggcccgtttctcgaacgacccgaaactttccaggtgtcactatcttcaataagaactcgtttcatgctttaaaacttggcagttattttgcctttcctcatatatgaaacatattaaaagaagaacagcttttcaaggcaagcgggtcataatttcaagacttgcttttcgggcccgaaaagttaccgggtttttcgagaaaCTACTGTCTGGAGCGGGAGAGGGGAAGGGAAGAAGAGAGATCCTAGGCACGAGGTTGTTTTAACTGACTCCCAGCTTAAATTAATACTTGAAAGACAaggttagtttgtgaagaaattgtggtgcttagtgtctatgggcaagtgaaacactaaaatctttatcttttt

Protein

Uniprot

Uniprot term	Description
Q39433	Ras-related protein RAB1BV OS=Beta vulgaris OX=161934 GN=RAB1BV PE=2 SV=1
P17609	GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ypt2 PE=3 SV=1
P28186	Ras-related protein RABE1c OS=Arabidopsis thaliana OX=3702 GN=RABE1C PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050305	Family	Small GTPase superfamily, Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47980	LD44762P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan