Gene detail

Detailed information of aacu_s0025.g108.t1 in Acropora acuminata

Genomic Location: sc0000025_pilon:1507538...1522508
NR annotation: XP_029212765.2, nuclear-interacting partner of ALK-like [Acropora millepora]
Species abbreviation AACUM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aacu_s0025.g108.t1

CTTGCCAATGAATTCTACAGTTGGTTTCAGGCAGGGCCAACTTCAGTCGTTATTATGGCAAGAAAATTTCTAATCCAGATCGTTTTCGTCGCCGTCTTTGTTCTTGGATCCATGGCTGCCCCAGAGAAGCTGAGAGAATTCTCGCATCATTGGGAAAACAGGCCGCCACAAAGACCCTGCCTTCTACGAGGTCGCCCCTGCTCCTTCTCTTATCCGAAAGCATGTTGTAACAGATTTTGCGACACCAAGGAATTTTTCGGTGCTTCACTTCAAATGAGAGAGGGTATATGCAGATAAAACCTTGCACTGGCCACGAAGACCAACATGGAAGACTGGAACGGACAATGGACAGCACAGGCACACCCACAAATCGCAATCTTGATTTTCGTAGTAAAGTGTTAAATTCTTTGGCAACTCACACTCGCGTTTCAGATTTAGACCCGATTGAATTTCGTcaggagcctatgaGTGAGAACAACTTGGCAAGCACTTGCGAAAGATCATATATTGGAGATGGATACGTCGGAGCAACAAAGTCAAGCCGAGTCCCCTCAACGGGGGGCGCTCGACAATATTTTTCCCCAGGCACTGGGCAGCGATATCGAGAAAAAAAGATGGCGGCTGCTGTGGAGGGAACTCCTCGTAGAGTGAAAGTTCTGTTATCCAGCTTTCTTCACACATCTGGCAATGAGCAAGAATCAAGGGGTTTTGAACCTGAGGATTCTGACGTAGAACCATTGAGCCGTAGTCAGCCAAGAAGTAAAGAAGCATTTTGGAATCGTGTCGAGACATTTTCACCTTTCACGTGGTTTGCAAAACCTTTGTCGTTATCACCTTTGCACTGTGCGCAGTTTGGCTGGGAAAACAGTGAAGTGGACATCCTGCGATGCGTGCTATGCAAGGCAACTCTTGATGCTACAATATCCACCACTTGGGATCCTGATATGTATTCTAAGACATGTGAGCAGTTAAATGAAGCTCTCGTCAGTGGCCATTCGAAACTCTGTCCCTGGCCTGATAATCCATGTCCGGAATCATTTGTAAGGTTACCAATATACAGCTACTCGCAGTGGTTGGATGATTACAGAGCAAGATGGCGATCAATTGTCACTCTTGCAGATGACATCCCTTTGGTGGATGAACAAGCAATTAAGGACATGGATGGTCTGTCACCTGGTCACATTGAAGGCCTTCAGAATTTGGTTGATGCAGGAAGTCTCTGCTGGGCAACGAGTGAAGTTGACCTAGAGCAAGCGTTAAAAGCATCTTGCATTATTGCCTTGTGCGGCTGGCAAGGAAGTTCTGCCAGTGATCCTGAAGTGAAAACCCTTTCCTGTTCCCTTTGTCGACGTGAATTGGGTGTATGGAATTTTTTCCCACTCCGTCATCTCCCTGATCAAGAAGACAGCACCTTGAATGAAGCTGTTTCTTATGTGGATACTGGGCAAATGGTTTGGGGAGAGAGGAGCACGCAACAAATCACACAACAGGAAGAATCTTGCGTTGCTACTGGCGAAGAGGACGAAGATCGTTCAGCGGAGAGGGCCGATCAAGCTGAACCTATGGAAGAAACTTCATATCAAAGTGATAAAATCTCAACACAGGGAACTTCGATGGATATATCTAAATCTATGAAAACTTCAATTTCAGTGACTGTCAAACCACACGAAGCAGTGGGACTCAAGTCTCCTTTGCATCGCTCAATGTTAGATTTGCCCGGTGAGGAAGCCACCGAGTCGTTATGCGTTGAGGTTGAGAATGAGAGTTTGTCTGAAAGACTTCAGGAGGTTGAAACCGAATTGGAGTTTTTGGGAAGCTGCAACAGGGAAGGGAGCATGGATAGAGAGGGTGATGAACCGAGACCCAAGAAACGGAAATTACAGGAGATAGAAAGGAATCTGTTTCATGTGATCTCAGAGCACCGCCCTTGGTGTCCTTGGGTTGTGAGTATCTGCAGTAACGATGGAACAACGTCGCCTGCTGGCTGGAGGCTTTTACTTGGAACTCTGTTAACCTCCATGAGCTCTACATCGAGCAGTCTCCTACACGAGACTCCTCCACAAGATGCTTGGAAAAAGGTCAGAAAATTGCTCAGCGATTGTTATTCTCCGGTGACACAACCTTAGTTGGGAAGGAAATATGCAAATTTCAACCGAAAGAGTTGGTCACGTGTCCACGCACTAGATGACGCACGCGGTCGGTGGCACGTGACGGGTCACTTAAAAGCTAAAGAGGCTTTTTTATATTATGTGGAAAGTTTTCATTTATAGTGGTCCAAACATTTAGACCGTTTTGGTCTTTGACATTATTTTAAACATTCAGTATCTAACGAAGAACAAAAAGAATTGATGGAGCTCAAGTGGAGGAAGAGAAGATTTTAATTTTACAAGCCAACGTTTTTTTTACCAATTACAAGAATGAACGAAACAAACCAATCGGAACGTGATTCATTAACAGATGATGAAAAACGCACTAGGGCCCTAGAAAGGGCTGGAGATTTTGCATATTGTGGGCTGTATGTCTACGTATTTTAATCATTATTGTTAAAGTACATATGACACGAAATTTTTTCCTCTGACTATTATAGGATAATCTTCGTGAAAACTATTCGAGAATTTAAAAGCGTTCTTAAGGGCTGAAATTACTATTTTTTTTTGCCTTCGAAATATCAACTTTTGCCTGCAGATGTCCCGGGACTTGGGAACAAATTTACCCCGCTCAAAGTTAATCTCAGTGAGGTCACAAGCTTATGTTAAGCCACTAAATTTCCTTGACTGCAAGCAAGAAGTTAGATCAGTGGCTTCCCATCTAAAGCCACTGGAAAATTTGGCTGTCTTGCTGAAAAGCGCGCTTGCAGTTTGTGATTACTTTCGTATTTACTCCACATTGGTTAATAGTGGCACTCGATTTattcttggttttcattcacgtgaggagaccaccatgttggtgtacaaaacaatagcaaaatgtcgctcaagttttacataacaatagaatcaaattcgcaaaagaggttttgccctattgttctgtacaccaacatggccgccgtgacgtcacatgaaaaccgaTATTTAACCAATAAAACAGCCGTTACAACTGATTTGCGCAATTGCGCGACAGCAGACAACGTCATCACGAAGTTAGAGTGACGTGTTTGGTTTCGTGATGACACTATTACCTTGCGTGTTCTATATTGCTAGAAAAACGCTCTGAAAGAAATAAATGTAACAGGTCCTTATCACGGCAACGGTGGCCGTTTATTTGTAAATGATTTCGATCATTTCTTTGTTATTATCTTTCTTCTCTGGCTTAAAAATACCATGTTATTTTAACCCAGTTGATATAACAATAAAACAAAGTTTGCAGT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006132 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08600 all species →	Rsm1	Rsm1-like	Domain	Interproscan
PF07967 all species →	zf-C3HC	C3HC zinc finger-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013909 all species →	Domain	Nuclear-interacting partner of ALK/Rsm1-like, C-terminal	Interproscan
IPR012935 all species →	Domain	Zinc finger, C3HC-like	Interproscan
IPR052238 all species →	Family	SCF(NIPA) complex component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15835 all species →	NUCLEAR-INTERACTING PARTNER OF ALK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aacu_s0025.g108.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.