Detailed information of aacu_s0028.g22.t1 in Acropora acuminata

Genomic Location: sc0000028_pilon:376386...412772
NR annotation: XP_044176878.1, E3 ubiquitin-protein ligase MIB2-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3ZBV2ATP-dependent RNA helicase DDX19A OS=Bos taurus OX=9913 GN=DDX19A PE=2 SV=1
Q61655ATP-dependent RNA helicase DDX19A OS=Mus musculus OX=10090 GN=Ddx19a PE=1 SV=2
Q9NUU7ATP-dependent RNA helicase DDX19A OS=Homo sapiens OX=9606 GN=DDX19A PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18346SH3_15Mind bomb SH3 repeat domainDomainInterproscan
PF00569ZZZinc finger, ZZ typeDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF06701MIB_HERC2Mib_herc2DomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00023AnkAnkyrin repeatRepeatInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040847DomainMind bomb, SH3 repeat domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR037252Homologous_superfamilyMib/herc2 domain superfamilyInterproscan
IPR000433DomainZinc finger, ZZ-typeInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR010606DomainMib-herc2Interproscan
IPR043145Homologous_superfamilyZinc finger, ZZ-type superfamilyInterproscan
IPR014014DomainRNA helicase, DEAD-box type, Q motifInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24202E3 UBIQUITIN-PROTEIN LIGASE MIB2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

TOP