Detailed information of aacu_s0034.g25.t1 in Acropora acuminata

Genomic Location: sc0000034_pilon:472862...499750
NR annotation: XP_029192989.2, SWI/SNF complex subunit SMARCC2-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8TAQ2SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1
Q6PDG5SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2
Q92922SWI/SNF complex subunit SMARCC1 OS=Homo sapiens OX=9606 GN=SMARCC1 PE=1 SV=3
Gene familySubfamily
Transcription Factors FamilyMYB

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04433SWIRMSWIRM domainDomainInterproscan
PF00249Myb_DNA-bindingMyb-like DNA-binding domainDomainInterproscan
PF16498SWIRM-assoc_3SWIRM-associated domain at the C-terminalFamilyInterproscan
PF16495SWIRM-assoc_1SWIRM-associated region 1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR007526DomainSWIRM domainInterproscan
IPR017884DomainSANT domainInterproscan
IPR001005DomainSANT/Myb domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR032448DomainSMARCC, SWIRM-associated domainInterproscan
IPR032451DomainSMARCC, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12802SWI/SNF COMPLEX-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0016514Cellular ComponentSWI/SNF complexInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0045893Biological Processpositive regulation of DNA-templated transcriptionInterproscan

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