Gene detail

Detailed information of aacu_s0037.g86.t2 in Acropora acuminata

Genomic Location: sc0000037_pilon:974181...980867
NR annotation: XP_044163212.1, TNF receptor-associated factor 6-like isoform X1 [Acropora millepora]
Species abbreviation AACUM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aacu_s0037.g86.t2

CTTATGTACGACTAGGAATTAGTACGGACGCTGAAGTACTTAAGTATGAGAACAGTTACTTGATTATGGTCAAGTATGCATTGGCTCCCGAACCACTATGTGACTGCTAGGTAACCTTGTCTCCGTCGTCATAATAATCGTTGCTAAGATACCGTTTTTCGTATAAATCATTTCCATAGCCTCAGTCGGGCAATTGTGAACGAGACGTTTTGAGTAGTCTGGGACGAGGTGATGTTAAAAAAACATGGCTTCTGCTGTTCCAAAGAGCCCTGTGCCTTCAGGTTACGAATATGATTTTCTTTCACTTGTTGATGAAGATTTCATCTGTCAGATATGTCACTTACCGCTTAAACAAGCTATTTTGACGAGATGTGGTCATAGATTTTGCAATGAATGCCTGAATGAATACTTTAGAAGGCTTAAAAACAGGAAACAAAATCCAGAATGTCCTTGTGACCGAGAGAAAATTGACAAGGAAAAGGACATTTTCCCCGACAAAGCAAGTCAAAGAAAGATATTATCATACAAGGTTAAATGCCCTTCTGATGGATGTCAGTGGACTGGTGAACTTCGTGATGTCGAGATTCACAAACTGGAACAAAAGCAATGGGTGTGGTCAAATGGAATGAATTCTGATGAACATTTGGAGACTTCTTGTCCTTGGAGAATTGTCCAGTGTCCATACTGTGGTCAAAGACATCCAAAAGCAGAGGACGAATTACACAATGAAGCCTGTGTCATGCTTCCTTTGACTTGTGCGTGTCATGAAATTATTCCAAGAATGCTGATGCAACATCACAAAGAAACAGAATGTACCCTAACATTACTCCCATGTCCTTATCTTGAACTTGGTTGCGCTACAAAGGTGGAAAGACGGAACCAGAAAAAGCATCTCCTTGATCAAACCTCATCACACTTGAGTTTAGCGTGCGAAAAACTCCTCAGTCTTCGCGAAGAATTCAATGAGCAAAAGGCAAAGTTGAAGAAACAAATGGATGATCTGAAGAAGGAGAACGAGAGCCTTTCACTCAAGCTATCTGCTCATGAAAAGGAAACTTCAAAACCCAAGATGGAAACGCCGGTTTTTGTTTGGAAAATAAGTGGATTCAGCGAAATGTTGCGACAAGCTAAGCAAGGGAGAAACAGTAAGATTGACAGCACACCTTTCTACACTTCATCGTATGGCTATAAATTGAAAGTGTCTGTGAACCCTAACGGTGATGGGTCTGGAAAGAACACACACCTATCAGCGTTTGTTATTGTTATGAAAGGTGAATATGATGGTATGTTACCCTGGCCTTTCAACCAAAAAGTCAGCTTTACACTTATTGACCAGCAAGAAAGCTTAAATGAACGCGAAAACATTGTGATGCATTTCAAATCTAACACCAGGCTGGAGAATTTCGCGCGCCCAGTGTCAGAAGAGAACCCTGGTAGAGGCTATGCCCGCTTTGTTTCACACGAGAAACTTAAGTCCAGGCGGTTTATTGTGGATGATACTCTCTTTATTCAAGTTGACGTGGGGCCATTGTGATCAAAATTTCAAAACATTAGTTGAAATTTCGAGACAGTGTTCTCAGTTAGCTCAAATGAAGAGAGTTTTTTTTAATTGACCTATGACGTGCCATAGAAGACAAATGTATTGTGCAAATTACGGCTTCATTCGTTTAACTTGTAACAATATCTCCAGCTTGTCAGCTTCAATCAGCGGACTGCGTGTGAAAATATGAGCTGCAACACGAAACAAAGGTTGATGTTGGATGCACAGGACCACCACTTTGATCTAACTCAGGGATCATTTCATGTAACTCATACAATCAGTCCACCTAAAAAAAAACTAAGTGTGCGTTGGAACTGAGACGATAtccatgtgggattatgtgttttgtagatctgggcctagttgttcaaagcccaattaagctaatcctggattagtagaaattttaactgttatttatttaccattgaaggaggatttttcacaagattaaggtttaaggaaaacaaatttgtaatttataaccttattgggccacaactttgcggcaaatcctcctttagcggtaaataaataggaattaaaatttacgctaacctaggattagcttaatcgggctttgaacaactgggccctgttgctgtttAGTTTGGAGGTTATTACATGGCTGTACGGAAATCTGAAATTTAACTGCTTTTCATCACGGCCAAGGCAATATAGATAAAAGGATAATGAAGGAGCTTTCATGTTTCATTGATAAGTTTAAGAATGATTGATAAGAACAAAGATTTCAAATATTGCCAGAGGAATACAAGTTGGGATGGTAGAACTTATCTTAGCCATAGATCTCTCTTTACTTGGATGTTTGAGCAAATATTTAAAATTCAACTATTGATCTCTCAAACCTTCgagagtagggtttgtacagaggcgagaggacacgcgttccaccgaaatggcctgggttgtaaaccatctgtgggttgagtatgttggttctctactTATCAATTCTGATACTTGAATAAAGTTGTTATTTTCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12933	TNF receptor-associated factor 2 OS=Homo sapiens OX=9606 GN=TRAF2 PE=1 SV=2
Q6DJN2	TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1
Q28DL4	TNF receptor-associated factor 6 OS=Xenopus tropicalis OX=8364 GN=traf6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000079 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176 all species →	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF21355 all species →	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR049342 all species →	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR012227 all species →	Family	TNF receptor-associated factor TRAF, metazoa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131 all species →	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09848	TRAF4; TNF receptor-associated factor 4	-	Small cell lung cancer	ko05222	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.