Gene detail

Detailed information of aacu_s0042.g52.t1 in Acropora acuminata

Genomic Location: sc0000042_pilon:620096...623673
NR annotation: XP_015759897.1, PREDICTED: ras-related protein Rab-8B-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0042.g52.t1

AGTTGCGTCATAACTTTTAAAAGGGATAACAACAAAGCAAAAAACAAAAACAGTGAAATGTTAACTTGGGACGTTAGTCAGCCATGACACGTGACGTTGTAAGAAGAATTTATAAGTAACGCAATCAGCACTTTTGCACGGGTGATTCGAGATGTCGAAAAAATATGACTATCTGTTTCGGTTGCTTCTCGTAGGAAATAGTGGAGTAGGCAAAACGTGTATCTTGATACGTTTTGTGGAAAATACATATTCTGAATCATACCTCAACACTATTGGAATAGACTTCAAAATAAGGACTGTAATTATCGACGGTAAACGAATTAAATTCCAAATATGGGACACTGCAGGTCAAGAAAGATTCTACTCTATTACGGGGGCGTGCTACCGCCGAGCTTTGGGGATTATGCTTGTATACGACGTGACAAACGAGGCTTCCTTCATGAATATCGCAAAATGGATGGATAAAATCGCAGAGAATGCGAACAAAGAAGTGGACAAAATCTTGGTGGCCAACAAGTGTGATCTTGACGGAAAACGCAAAATTAGTCAAGAAGCCGGAGAATCATTCGCTGATGCCCTTGGAATTTCTTACATTGAAGTTAGTGCTTTGTCAAATAGGAACGTAGAGGAAGCATTTATTACTTTAGCTAGAAACATTTTAAGGAGAACTTCGAATTGTAGACAAATTGAGAGCGCACCACTTGACAGCGAGAAGGTGGGGCTGAGCTCCGAGTGTAAGTCTTGTTAGAGCTGATGACTGAAGAAGGTTTAAAATGAGGTCACTGGGACGGGTATGACTACAGGTTTAATATACGAAAAAACAGCCTTGGGAACGAGGTTGCGTTAATCATTTTTTTCAAGAGGTTGGCTCATCGCTTCAGATGCGCAGTTGGAGAACAAAAGTGAAGCATAGCATAGACCAGGCATATTGGTGTTTAAGTATTTCTATCGCAGTCTTAATTTGGAGGTGACCGCACTTTTGTATTTGCAGTCCACGTTAAAATATTTTCAGGCCGAAAAAAATTTTTTGACTTTCTTTTTTATCATGACGACAAAACAATGGCCTGTAATACGCATGCCCAGCTTGTGAGTCAGTCTCTTTGAAGACAAAAGAAAAAATAATAGGGCGAGCATCCAAGGGATAACACAGCAACGAGCAAAGAAGTCGGTGCAGCTATGTTTCTATCAACTAGCCCACTGTTTATCGCCAACGTTTATTGAAGGCTATCGAATCACCTGATCCCGATTTTTCTTACGTCCTTAGTGCTTAGTGATAACAAACACTCTAGACTTATCTCAAAAGTTATATCTTTCCTCTTCAAACTCTTAATACCAAAACAGCTTATTATCCTTACAACaatagggagcttaagcaaccacgacgacgacggcaacaaaagacccacgaatttgtatatttgacaatgaaaaacagtatttttgcacgctttgcacgtgcatgtttcaatttttgacattttgtagacgtcctcgttctttctacgacgtgaattaagaattttttctggtgtgtggacgacgtgagcacatgatgacaaatgtcccaagcgctggttccaatttaattccaggatagttggaacacatttttcaagcataatgagtttgaataattgaaaaaggattgcagaaacgcgaagttacattttcaaatgacgttctcgcttccgtcgacgtcgtgtttgcttaagctccctaatatacaaactAGCTTCCACGGGGACAATGGTAAGACTGCAAGCAGGTCACACTGGCCTTTCAAAAAGATTTGCAAGTTGTGCTTAACTCGATCCCTAGAACATTAATAATATTATTTATACAAGCCTTCTGATTGGCTAGCAAGACTATGGCGCTGCTGAGTGAATCTAAAAATGAAAATTTCCCTAACCCAAATATTTAAGATCCTGACAAACAACATAATTAGTTTTTGTTACCTGAAAATATGATGTATCAAACACATCTTTGTCAACAAATAAAGGATTACTAAGGCTCCAAAATAAGTTAATAACTTAACGAAATAGTGTACTTGTCCTTGATTGCACAAGGGTCTAAATTGGGTCTTGGTTTCTGCTGACGGTTGCAATTTTGGCTTTTGCTTTTATAGTTATGGTTACTTAATGTTATTTTGGTTGAAGAATAACAAAAAGTCATGGAGCTGTTTTGCGTTACCTCAGAGACTGAAACCAACACTTACCGTTTAAATAATTTTTCCTGGTTCTTAAAAATAATTAAGAATCTTTTCC

Protein

Uniprot

Uniprot term	Description
Q2HJI8	Ras-related protein Rab-8B OS=Bos taurus OX=9913 GN=RAB8B PE=2 SV=1
Q92930	Ras-related protein Rab-8B OS=Homo sapiens OX=9606 GN=RAB8B PE=1 SV=2
P61028	Ras-related protein Rab-8B OS=Mus musculus OX=10090 GN=Rab8b PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR050305	Family	Small GTPase superfamily, Rab	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47980	LD44762P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07874	RAB1A; Ras-related protein Rab-1A	-	GTP-binding proteins	ko04031	deepkoala