Gene detail

Detailed information of aacu_s0045.g64.t1 in Acropora acuminata

Genomic Location: sc0000045_pilon:897391...940340
NR annotation: XP_020613409.1, caspase-2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0045.g64.t1

CTATCATCATTAATAACAAGAATTTCCTGAGTTCTACAAGAATGGATCCCCGCCACAGCACTGATGTCGACCGGGATGCCCTGGAGAAGTTGTTCGAGTCTCTAAAGTTTGAGGTCAAAATCTACAACGACGTAACAACGGATGGGATAAAGCAGATAGCCCAAGAAATGGCCGCGTTCGATCATTCTGATTATGATGCATTCATATTCTCCATTCTGACGCATGGTAAAGAAGGTCTCCTTTACGGAACGGATGGTACCATTTCCATCAGGGATCTCACCTCTGGGTTTAAGGGTGCCACCACTTTGGCTGGAAAGCCAAAGTTGTTTTTCTTTCAGGCTTGCCAAGGCCATGAATACTTGGATGGAATGGATGTGCCTGATGGCCCTCAGGCGAGCAGCAAGGTGTCTGTACCTGCGGAGGCCGGTTTCCTATACGCTTACTCCACCGTACCCGGTTACTGCTCCTGGAGGAATTCCGTCAATGGCTACTGGTTCATCCAGTCACTGACCAAGGTGTTCGAAGAAAATGCTGAGCGCATGGATATCCTGCGAATGCTGACCCGTGTTAACGCTATGGTGTCCACCTTAAAGTCTCACACCCGCGAAAGTTACTCGGATAGCAAATGTCAGATTATCGTCCATGATCCCAGAGAGATATTTGTTGTCCGTAGACGTAGATGGCCTAGGTATGCAACAGCAGAAAGCATCGTGGAGGTCTTTTCAGATTGTGGTGCCAAAAAAAGGATTCAACTCACATACAGGAGTGAAGGACACCCCTTTGGTGAATGTTTTGTGGAACTTGAAGACACAGAAGAGATCATCAAGATCCAGAAGAGCTCAAATGTAGAGATTAAAAATGTGTTAAAGCCAAAACTTAAGCCTTTCATGTCCCCTCGACCTGGTCCTTATGATAGACCACCTGGTGACCCTGAAGGTGGGCGAAGACGATTTGAAGTTGTTGTGACAAGAGGTCGCAGAAGGATGTGGATAGAATATCCCGCGCGCTCGTGCACTATTCAATTTAGTGCTGACTTTGCAAGCTACAAGGATACCCAAGCTTCCATGTTGAAGAACAAACAGTCAATGGAGGGCGGCGACGAATCAGATGCCGGCCCATTTTTGGAGTTTTCAGCCGGCGGCGGAGTACCTGATAAGCCCACAGGGCGCGCTGTTGATACTGAAACAATTTACAAAATGAGTCGTACACCAAGAGGAATTGCTATCATCATTAATAACAAGAATTTCCTGAGATCTTCAGGAATGGATAAGTATCCCCGCAACGGCACTGATGTCGATCGGGATGCCCTGGAGAAGTTGTTCAAGTATCTAAATTTTGAGGTCAGAATCTACAACGACGTAACAACGGATGGGATATGTCGGATAGCCCAAGAAATGGCCGCGTTGACTGATCATTCTGATTATGATGCATTCATCTTCTCCATTCTGACGCATGGTGAAGAAGGTGTCCTTTACGGAACGGATGGTACCATTTCCACCAGGGATATCACCTCTAAGTTTAAGGATGCTACCACTTTGGCTGGAAAGCCAAAGATGTTCTTCTTTCAGGCTTGCCAAGGCGATCGATTAATGGATGGAGTGGATGTGCCTGATGGCTCTGAGTCGGAAGCGAGCAGTAAGGTGTCTGTACCTGAGGAGGCCGATTTCCTCTACGCCTACTCAACCGTGCCCGGTTACTACTCCTGGAGGAATTCCGCCAAAGGCTCCTGGTTCATCCAGTCACTGACCAAGGTATTCGAAGAAAAAGCTGAGCATATGGATATCCTGCAAATGCTGACCCGTGTTAACGCTAGGGTGTCCACCTACAAGTCTTGCACCGGCCGAAAAGGCTCGGATGACAAACGTCAGGTTCCTAGCTTTGTGTCCAGGCTTCTCAAAGACCTGTATTTCTTCTCCGAGAAAGTCACTGAACAGAACTAAGTAGTCAGTGACTACTTTCTGATTTTTAATGCAGGTCTCAACAATATTTCATACTTGCCAAAATGAGGTTATTAGCAATCATTTTATCGATTCTCTCTCTATCCTGTCAGGAAAACGAGTTTAAGAACGAATTTTCACGGCAATTGCAAAGTAAACGTCGCTTAAATTGTAACTTGACTGAAGAAATGTTTTTAAGTGCGTGCTGCATGTGCCAAATACcaacgacaacttatcaaaaatatgattggtcgaatgtgggaaataatcgtgtggcacgtgcggcccgcactcataacatgtcattacctcaatatttgagttaattctggaggacaacgtgaacctacagtagcaaatgtttcGACCATATTCTCCAACACTGTTGGGTAGAAATAATTGTGAAATACCTCCAGTTGCTCAAAGATTCGTTCTTTTTGAGGTTGCCGTTGTATTTTCTTTCACTATCAAAGCGTGCTATTTTTTAATCTGACTTTAGGAAAATGCATTTAGTATATGCGACGACGCGTTTTGCCGCGTGTGGTGTTGGCCTTAGGTATCCGTATAGGTCTGTTTGTTCTTAATTTACTTGACGTGGTCAGTTGAAAGCGATATGGGTTTAAGTCTTGCTTTGAATAGGCCTATGGAAAGTTGTGTTCATGAAAGTAATTGTAGTTTTGTATCCTAGGTCGGGGTTGTCTCAATTGTGGAAATCATAATTTTTCTTTCAAGGACAATAGACTCAGTATCGAGATAAAGAAACTTAGAGATTATCT

Protein

Uniprot

Uniprot term	Description
P55214	Caspase-7 OS=Mesocricetus auratus OX=10036 GN=CASP7 PE=1 SV=1
Q60431	Caspase-3 OS=Mesocricetus auratus OX=10036 GN=CASP3 PE=2 SV=1
P97864	Caspase-7 OS=Mus musculus OX=10090 GN=Casp7 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656	Peptidase_C14	Caspase domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029030	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR033139	Active_site	Peptidase family C14A, cysteine active site	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR015917	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR001309	Domain	Peptidase C14, p20 domain	Interproscan
IPR011600	Domain	Peptidase C14, caspase domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002138	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10454	CASPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0043525	Biological Process	positive regulation of neuron apoptotic process	Interproscan
GO:0097153	Molecular Function	obsolete cysteine-type endopeptidase activity involved in apoptotic process	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan