Detailed information of aacu_s0052.g69.t1 in Acropora acuminata

Genomic Location: sc0000052_pilon:915843...935983
NR annotation: XP_015756967.1, PREDICTED: collagen alpha chain-like [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q28668Collagen alpha-2(I) chain (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=COL1A2 PE=2 SV=1
O46392Collagen alpha-2(I) chain OS=Canis lupus familiaris OX=9615 GN=COL1A2 PE=2 SV=2
B8V7R6Collagen alpha chain (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

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