Gene detail

Detailed information of aacu_s0054.g113.t1 in Acropora acuminata

Genomic Location: sc0000054_pilon:1431149...1444709
NR annotation: XP_029204965.1, vacuolar protein sorting-associated protein 4B-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0054.g113.t1

CATCAGTTCCAGCGGAACACTTTTTTCTTCAACAGCCATTTTGGAGCTAGTTGTAGTCGACTACACTCCCTTGCATTTGATTGGCAAGGACAATATATTTTAGGAGAAGCGATGTCCGGCGAAACACTTAAGAAAGCTATAGAAATTGTCACGAAGGCTACAGAGGAAGATAAAGCTGGAAACTATGAAGAAGCTCTTCGGCTATATGAACATGGAGTGGAATACTTTCTGCATGCGATAAAATATGAAGCGCAAGGTGATAAATCTAAGGAGAGCATTCGACAGAAATGTATTCAGTACCTAGATCGAGCAGAGAAACTTAAGACATATGTTAAAAGTAAAAACAAAAAGGCTGTGGCGTCTGTGGGAGGAGCAAAAGAGAGTAAAGGGAAAGAAGATAGCAGTGGGGAAGAAGATGATGATGCCCAGAGCAAAAAACTAAGAGGACAGTTAAATAGTGCAATTGTAATGGAGAAACCCAATGTGCAGTGGGCAGATGTAGCAGGATTAGACTCCGCCAAGGAAGCCCTCAAAGAAGCTGTCATTCTGCCAATCAAATTCCCTCATTTATTTACTGGAAAACGCACACCCTGGCGAGGAATTTTGTTGTATGGGCCACCCGGTACTGGAAAATCATACCTTGCCAAGGCAGTTGCAACAGAAGCAAACAACTCAACTTTTATATCAGTTTCTTCATCTGACTTGGTGTCTAAGTGGCTGGGAGAAAGTGAGAGACTTGTAAAGCAACTCTTTGAGATGGCTCGTGACAACAAGCCTGCCATCATTTTTGTCGATGAAGTAGACTCCTTGTGTGGCTCCAGAAGTGAGAATGAAAGTGAATCTGCCAGAAGAATCAAAACAGAATTTCTAGTTCAAATGCAGGGGGTTGGTGTTGACAACAAAGATGTCCTTGTGTTAGGTGCCACAAATATACCATGGACTCTCGATTCTGCAATAAGAAGAAGGTTTGAAAAGAGAATTTATATTCCTTTACCTGAAGCATCAGCTCGAGTGAAAATGTTTGAACTTCATATGGGAAACCTCAAACATTCCATCGAGCCAGGACAATTACGAGAACTTGCAGAAAAAACAGATGGATATTCAGGTGCAGATATCAGCATTGTTGTGCGTGATGCCATGATGCAGCCAGTTCGAAAAGTTCAGCAAGCAACTCATTTTAAAAAGGTCAGAGGACCATCTCCAAACGATCCAAACATTATAATGGATGATCTCTTAACACCGTGTTCTCCAGGAGAGCCTGGTGCTATGGAGTTGACTTGGATGCAAGTTCCAGGAGAGAAGCTATTAGAACCTTTAGTCAACATGACTGACATGCTACGATCTCTGGCAACGTCAAAACCGACTGTCAACTCTGATGACTTGAAAAAGTTTGAAGACTTCACAAGAGACTTTGGACAGGAAGGATAGACAGAATTTTGGCTGATAATTTTGCACAGAATATCTTTCTTTGGGGACAGACATCTCCAGAGAGAAACACTTTGTTTTCTTAACTAAAAGTTGATTATGGCTCTTCTTGGAAATGAGGAGGCTGCAATAATAAAATTGTTACACTTTTACTTAAGAAATGCATATAGATATATTACTGTATGTCAAGTGAAAACATGCAAGTCTGTTGCCTGGCCTGTAAAAGATGATACAGAAGAATCTAGCAAGCTCTATAATGACAATCAACCCATTGCCCATCTATTGATTTAAAGTACTAGGCAATTAAATGATGTGGAGTGGTCACTAACAGTGAAAGTGGCCTCATACATCAATGACAAAGTCACACAAGACTACTGAACAATTCTGGtaattgcaggggtgcctggagaaaagccttaagtgacttctgataaattaccagattctccttccaaatttccttgtattcagttgtgcatgactaggagaatttgaaattgcatcaaaagtcacttaacggcttattccacacaccccttcaattTTATGTTTCTCATTTGATTCATCATCCAGGCTGAAATTGTTACCATATCAAGGTTGTCTCCTCTTATTACTTTTGGAAGTGTTTCTTATTAATAGCTTTGATAAACTCTGGAGCTTTTAAGGCTTCTCTGCATACCTAGGTTAATTTGTTTAATGATGCAACACACCCTTCAATAATTCTTATAATAATGATAATTGATTTTATTTCCATAGTAATTTGTGTGGTTAAATCTTAGTTTGCCTGTACAACTTATGGTTGGCGTGTTTGTGTCATTGTGTCGTGCCTCAGAGTTACATAAATGGTGTAATGTTAAAAAAAATAGCATTCCTGATCTGTATTAATCTCTTTTGTGACGTTGCTGTTCATTCATTTTTCAACATAAGCTGTGAGCTCTTATTTCAGGAGCAGTTTTCCCTTACAGATCACAAGTAACGGCAGTGTGAACATAGTATTTTTACAGCGGACCAGATCTTTTGCTGAGCGGCCTTAAAGGGGGGTCCTTCACACATTAAATTGTTACTAAATATAAGCAATAATGCATCACATTAATCAGAATTTAAAAGATTTGTGGCTTCTATTATTTTGCAATATTGAATCACAAAGAACTGATACACTCCAATCACGTATCATGACACACACCCTTATGGGGCCCCATATACTAATGCAAGCCTTTAAGTTTTGAATAAATGTTTTTATGCACAAGGTTAGTGTTCATTAAGCTTTGTGCTTTAGCATTGAAATTCAGACCCGGACGACTGTGGAATCAGTGCCAGAATATTTCATGAAAGGAGCTGTCACTCAGAGTCTGCAGAAATAAGCAATAAATATCTTGATTGACC

Protein

Uniprot

Uniprot term	Description
P46467	Vacuolar protein sorting-associated protein 4B OS=Mus musculus OX=10090 GN=Vps4b PE=1 SV=2
O75351	Vacuolar protein sorting-associated protein 4B OS=Homo sapiens OX=9606 GN=VPS4B PE=1 SV=2
Q5R658	Vacuolar protein sorting-associated protein 4B OS=Pongo abelii OX=9601 GN=VPS4B PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF04212	MIT	MIT (microtubule interacting and transport) domain	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF09336	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR007330	Domain	MIT domain	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR015415	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR036181	Homologous_superfamily	MIT domain superfamily	Interproscan
IPR045253	Domain	Vacuolar protein sorting-associated protein 4, MIT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0007033	Biological Process	vacuole organization	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12196	VPS4; vacuolar protein-sorting-associated protein 4	-	DNA repair and recombination proteins	ko03400	deepkoala