Detailed information of aacu_s0060.g56.t2 in Acropora acuminata

Genomic Location: sc0000060_pilon:1271599...1348887
NR annotation: XP_029211238.2, basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X1 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q05793Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
Q06561Basement membrane proteoglycan OS=Caenorhabditis elegans OX=6239 GN=unc-52 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00053Laminin_EGFLaminin EGF domainDomainInterproscan
PF00054Laminin_G_1Laminin G domainDomainInterproscan
PF00008EGFEGF-like domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00052Laminin_BLaminin B (Domain IV)DomainInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR002049DomainLaminin-type EGF domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR001791DomainLaminin G domainInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR000034DomainLaminin IVInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR050958FamilyCell Adhesion and Cytoskeletal OrganizationInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45080CONTACTIN 5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan

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