Gene detail

Detailed information of aacu_s0062.g17.t1 in Acropora acuminata

Genomic Location: sc0000062_pilon:475184...482155
NR annotation: XP_029199355.2, uncharacterized protein K02A2.6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0062.g17.t1

TCTGATCTACATGCTACCAAAATGGAGGAAGCGTCTGTTACGTCCAGGCAGGTGAACAAGATTTGTAGTGGGTCTCAAAGGTCAAATGAGAAAATCAGGGGAAGTTCGCGGTCGCGTCGACCAACGAATGCGAGGAATTCACGAGCACCCAGCCATGACAAGAGGCCAGTTGTCTGTTTTTGTTGTGGACGTCCGGGTCATCGCGCAAAAGATTCTTCTTGTCCTGCAGTCGGAAAAACTTGCAGTAACTGTGGAAAGCAAGGGCATTTTGCAGGAGTTTGCAAAAGCGCTCCGAAAGAGTCACTGATTCTCCGAACATTGCATACCAACGGAATGCAAATGACCTTCGATATTACACCAGTTGCGCAACCACAGCGCCACCTTCCATTTCATAATCGCAAAGATCTAGATGTGGAGAAAAAACTCCAGGAATTACAAGATCTTGATATTATTGAGGATATAGAAGGCCCGACGCTTTGGGTTTCACCTCTGGTCGCTGTCCCAAAGTCCAATGGCGATGTACGTGTGTGTGTCGATATGCGTCGCGCAAATGAAGCGGTCATCCGCGAGCGACATCCAGTCCCAACGTTGGAGGAAATGTTAGCAGCCCTTAATGGAGCGGCTGTGTTCTCCAAGCTTGATCTTCGATGGGGCTATGATCAGATTGAATTGCACCCAGAGTCAAGAGTGCTCACTACGTTCTCGACACACAAGGGACTTAAGCGTTATAAACGCTTAATATTTGGTTTGTCGTCGGCACCAGAAATGTACCAGTATGTGATTCAGCGAACTCTTCAAGGAATTCCCGGAGTTAGAAACATTTCTGATGATATTGTTGTGTTTGGCTCTGACCAAGGCAGTCAAGACAGGAGTCTGGAACTGTCGCGTCTCGAGAACATTGAACCGGGAAAACGAAGTGGCGACAGTGTTCGTCCTGTGGGATATGCAAGTCGCACATTAACAGATGTTGAGAGGCGCTACTCTCAGACTGAAAAGAAGGCGCTGGCGGTTTTCTGGGCCTGTGAACGTTTCCATATTTACCTATATGGCAAACTGTTTACCCTGTACACAGACTACAAGCAGCTGGAGCTCATCTACAGCCCCAAGTCAAAGCTACCTCCCCGGATTGAACGATGGGCACTTAGATTGCAGCCGTACACATTTAAAGTTGTACACATGGCAGGAAAGACAGACCCAGCCGATGTCCTCTCAAGATTGCCTCTGGAAAACCAGCCCTTCTGGGAAAGGAATATTGCGGAAGAGTACATCAATTACGTTACGGTAAACGCAGTTCCAAAAGCACTCACTCTTAAGCAGATTGCATGTGCTACTGAGACAGATCCGATACTACAGCAGGAACAAAAATGTTTGGGTGGATCTGAGTGGCCAGACACACCTGAGCTTAACCCATACAAGCGCTTCAAAGATGAACTGTGCATGCGCAATGGGATTGTTCTGCGAGGGTCTCGAATTGTGATGCCAAGGATGCTCTGGCAAGCAACCCTATCTAATGCGCACGAGGGCCACCAGGGAATTGTGCGAACCAAACAGATGGTCCGGGAGAATGTGTGGTGGCAAGGCATCGCCCAACAAGTCGAGACAATGTTCGTTGCTGTGAAACGAGAACGATTGTTTAACTCTCAACCCACGGCGATTTTTTTCCAAGCGCTTGACTCTCTGGTTCTGCAGCAGGAGTCCTTGCAGACTTTGGCTGTTCTGTGGACGATGGAGATTTCGACATACAATTTCAACGTTGTTGAATTTCGCATTCGACAGAATCTTTTTCAATGTTGGCAACGGGGTTTTAAAGTCGCTTGCAAGAAACTGACAAGCTCAACGGCGTTCCGAATCTTTAATGCACATTTTGCACAGACTCTGGGGGAATATGATTTAGATTGCCGGAGGAGTGAACCGTCCCAGGTCTTCAGATAAAAGTTTGTCCAGTGGCCGTTTCTCAACACCTTTCTTGCCAGTAATTTTAACTAAGTTGTCCGTGGATATGTGCTGAAATTTGTCGCGTTTTTGTACTCCAAATAAACACCAACAAAGTCG

Protein

Uniprot

Uniprot term	Description
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1
P31843	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan