Gene detail

Detailed information of aacu_s0075.g79.t1 in Acropora acuminata

Genomic Location: sc0000075_pilon:1148128...1152421
NR annotation: PFX13962.1, Uncharacterized protein K02A2.6 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

aacu_s0075.g79.t1

ATGTCAGTCTATACCATACCGCCACCTCCACCTATGAATGTAAAGGACGATGTTTCAACCAACTGGAAATTGTTCCGACAAGCATGGGAATATTACGTTACCGCTACCGAGTTAAACAAGAAATCTAAGGAAGTTCAGGCGGGTGCACTGTGTAGCGTGATGGGTTTGGAGTGTGTGAAAGTAATGAATAGTCTTACTACTCTCTCTGCTGAGGACAAATGCGATCCTGGGAAGATTCTGACCGCTTTAGGAAACCATTTCATGCCTCAAAAACATTTATTGTTTGAAAGAGTCAAGTTCGGATTTGCTAATCAAACTGAGCATGAAATTATTGACCAGTATGTTGTGAGACTGCGCCAGCTGGCAGAATCTTGTGAATTTGAAGGGCTCTGTGAAAGTTTAATTCGCGATAGATTAGTTATCGGTACTCGAGATTCGGCTACTCGTGACAGGCTACTTAGGGAACGCCCAGTCCCTGGATTAACAAGATGCATAGAGGCTCTGAGAGCTAGTGAATTGTCTAGAACACACCAGGAGCAACTTAAAGATGCAGTGAGCGATTCGCCGAATACTATCCATGCCGCAAAAAAACAGAGTCCTAGGAATAGAAAGCAAGGTCGACGTAATTGTAGACATGaatcaaagcaaagtcaacacgagaaaacaaatgcaaagcaatgcaaGTTCTGTGGCACCAACCATCCTTACGATAGAGCTAAATGTCCAGCTTCTGGTAAGACTTGCTTTAAGTGTGGCAAACAAGGCCACTTTGCTGCTAAGTGTCAGGAAAAGAATCGGGTTTCAAGTGGATCAGCCAACAAGATTGGGGAAGTCGAGCTGGACCCTCCTGGTGGGAAGATAAGATTGTACGATGGACGTGTGGTTGAACCTTTGGGATCCTACACCTTCACAGTCAGCTTGAACAGTGGCTCACAATAAGGCACTCATCAGCAGATCAAACAGTGTACAACCGCAGATGCCACATTACAAAGTCTCAAGAACACGATCATGACAGGCTGGCCGCTTACCAAAGAGGAAGTTCCGGTTTGTATCCGTGAGTATTGGAACTACAAAGAAGAGTTAACTGTCCAAGATGGTATCTTGTACAAAGGAATGAAAGTGATTGTCCCTGCTTTTATGAGACCTCAAATGATTGCAAGAGCACACTCCAGCCACCTTGGGCCTGATGCTTGTGTACGTCGAGCACGTGATGTGTTATTCTGGCCAAGCATGGCGGACCAAATCAAAGATCAAGTTCAGAGCTGTGAAGTTTGCAATGACTTCTTAGCTAGACAACAAAGGGAACCATTGATGACCCACAAGATTCCTGAAACCCCTTGGTCAAAGGTTGGTCAAGATCTCTTCACCCTCGGTGATGAGAGCTATTTAGTGACTGTTGATTACTTCAGTGATTACTTTGAGCTTGATCTTCTATCAGATACTATTGCTGAATCAGTGATAAATGCAACCAAACGCCACTTCGCACGTCACGGCATTGCTGACATGGTTACCGATAATGGTCCGCAGTATTCCAGTGCACATTTTAGCAAGTTCGCACGTGAATGGGAATTTCAGCACACGACCAGTTCATCATTGCACAGCCAAAGCCATGGAAAAGCTGAGTCGGCAGTCAAAATCGCAAAGAATCTGGTAAAGAAAGCAAAGCGAGGACAAGGACCATCCATTCCAACAACTGAAGCATTACTGAAGCCAAGCGTCATTGATGGAGTGTATGAAAATATTAAAAGGAAGAGACAGCAGGCGAAAGCAGCATATGACAAGCATGCAAAACCATTGCCCGAGCTCCATGTAGGAGAACCAGTAAGGCTTCAGCCCGTAAATCCTAAAGCACTTTGGGAGAAGGGTTCATGTGTGGCAAAAATCGGACCACGTTCTTATCTTATTGAAACAGAGAGCGGAAACCTATACAGACGGAATCGCAAGTTCATTCGTCAAGATCCTAGCCAAGAACAGGCCTCATCGGATAGCGGTGGCAAGAATCTGCCTAGTCAGCTGTCACCCAAAGCGGAGTCACCAACCAAGTCATTATCAGATGCCAAGGCAAATTCTCCTTTAAAACAGGCACCAACAATGACTCAAACTCATGAAAGTCGCCAGCCAAGGGCTACTGCAGTTGAGGAGACTGTGACTTTGCAACCACAACAAACTGTTGTTACTCGAAGTGGCAGAACAAGTGTGCGCCCCTCCAGATTTGATGAATTTGTCACCTAG

Transcript

aacu_s0075.g79.t1

GTGGAAGTTTATCAGCCGCCATATTGGATCCCTGTTTTCGAAAACACCGAAATTGTGAGTAAAAAGCTTCCTTTTTCATCATGTCAGTCTATACCATACCGCCACCTCCACCTATGAATGTAAAGGACGATGTTTCAACCAACTGGAAATTGTTCCGACAAGCATGGGAATATTACGTTACCGCTACCGAGTTAAACAAGAAATCTAAGGAAGTTCAGGCGGGTGCACTGTGTAGCGTGATGGGTTTGGAGTGTGTGAAAGTAATGAATAGTCTTACTACTCTCTCTGCTGAGGACAAATGCGATCCTGGGAAGATTCTGACCGCTTTAGGAAACCATTTCATGCCTCAAAAACATTTATTGTTTGAAAGAGTCAAGTTCGGATTTGCTAATCAAACTGAGCATGAAATTATTGACCAGTATGTTGTGAGACTGCGCCAGCTGGCAGAATCTTGTGAATTTGAAGGGCTCTGTGAAAGTTTAATTCGCGATAGATTAGTTATCGGTACTCGAGATTCGGCTACTCGTGACAGGCTACTTAGGGAACGCCCAGTCCCTGGATTAACAAGATGCATAGAGGCTCTGAGAGCTAGTGAATTGTCTAGAACACACCAGGAGCAACTTAAAGATGCAGTGAGCGATTCGCCGAATACTATCCATGCCGCAAAAAAACAGAGTCCTAGGAATAGAAAGCAAGGTCGACGTAATTGTAGACATGaatcaaagcaaagtcaacacgagaaaacaaatgcaaagcaatgcaaGTTCTGTGGCACCAACCATCCTTACGATAGAGCTAAATGTCCAGCTTCTGGTAAGACTTGCTTTAAGTGTGGCAAACAAGGCCACTTTGCTGCTAAGTGTCAGGAAAAGAATCGGGTTTCAAGTGGATCAGCCAACAAGATTGGGGAAGTCGAGCTGGACCCTCCTGGTGGGAAGATAAGATTGTACGATGGACGTGTGGTTGAACCTTTGGGATCCTACACCTTCACAGTCAGCTTGAACAGTGGCTCACAATAAGGCACTCATCAGCAGATCAAACAGTGTACAACCGCAGATGCCACATTACAAAGTCTCAAGAACACGATCATGACAGGCTGGCCGCTTACCAAAGAGGAAGTTCCGGTTTGTATCCGTGAGTATTGGAACTACAAAGAAGAGTTAACTGTCCAAGATGGTATCTTGTACAAAGGAATGAAAGTGATTGTCCCTGCTTTTATGAGACCTCAAATGATTGCAAGAGCACACTCCAGCCACCTTGGGCCTGATGCTTGTGTACGTCGAGCACGTGATGTGTTATTCTGGCCAAGCATGGCGGACCAAATCAAAGATCAAGTTCAGAGCTGTGAAGTTTGCAATGACTTCTTAGCTAGACAACAAAGGGAACCATTGATGACCCACAAGATTCCTGAAACCCCTTGGTCAAAGGTTGGTCAAGATCTCTTCACCCTCGGTGATGAGAGCTATTTAGTGACTGTTGATTACTTCAGTGATTACTTTGAGCTTGATCTTCTATCAGATACTATTGCTGAATCAGTGATAAATGCAACCAAACGCCACTTCGCACGTCACGGCATTGCTGACATGGTTACCGATAATGGTCCGCAGTATTCCAGTGCACATTTTAGCAAGTTCGCACGTGAATGGGAATTTCAGCACACGACCAGTTCATCATTGCACAGCCAAAGCCATGGAAAAGCTGAGTCGGCAGTCAAAATCGCAAAGAATCTGGTAAAGAAAGCAAAGCGAGGACAAGGACCATCCATTCCAACAACTGAAGCATTACTGAAGCCAAGCGTCATTGATGGAGTGTATGAAAATATTAAAAGGAAGAGACAGCAGGCGAAAGCAGCATATGACAAGCATGCAAAACCATTGCCCGAGCTCCATGTAGGAGAACCAGTAAGGCTTCAGCCCGTAAATCCTAAAGCACTTTGGGAGAAGGGTTCATGTGTGGCAAAAATCGGACCACGTTCTTATCTTATTGAAACAGAGAGCGGAAACCTATACAGACGGAATCGCAAGTTCATTCGTCAAGATCCTAGCCAAGAACAGGCCTCATCGGATAGCGGTGGCAAGAATCTGCCTAGTCAGCTGTCACCCAAAGCGGAGTCACCAACCAAGTCATTATCAGATGCCAAGGCAAATTCTCCTTTAAAACAGGCACCAACAATGACTCAAACTCATGAAAGTCGCCAGCCAAGGGCTACTGCAGTTGAGGAGACTGTGACTTTGCAACCACAACAAACTGTTGTTACTCGAAGTGGCAGAACAAGTGTGCGCCCCTCCAGATTTGATGAATTTGTCACCTAGAGACAATGAACTTTGAACTTCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan