Gene detail

Detailed information of aacu_s0076.g21.t1 in Acropora acuminata

Genomic Location: sc0000076_pilon:618751...635717
NR annotation: XP_015765164.1, PREDICTED: stimulated by retinoic acid gene 6 protein homolog isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0076.g21.t1

CTAGTCAGAGACTTTTTATGATGGTTATTGTCCGCTGGCTGTGGGATGAACAAAGGGAAAAGGGTTTCTCTTACACATGGCTTGGAGAATGTGTGGAGAGGGGGTATTCAGTTGTGCAGGTGATGAACGCAACCTTTTTGAGCTTGTCTGTGTGGGCCCTTCACTTTTCATCATTTTGGTTTTGGCATTTCTCAAGCACAGAGAGAGTTCCAAACTTAGTTGCACTAATGCCTACCCGGGTCTGGTGATCCCAATTAACTTTCTCAGAAGTTCTAAGTCGAACAGATTTGCGATTGCTGCTGCTTTTGGTGCCACAGCAAGTGCTTGTCTTGACCTTGCTCTCTTGGCGGATCTGGACCACATCAACTTCATTAAAAAAGGCAGCCATCCCTGGTTGAAAGTTATTGAAGGACTTGTAGCTGTTCTGGTGTTTGGATTATTGTTTTATCCATATTTTGCCTGCTTAACAACCAAGCACAAGCTGATTGGGTCCTTAATGGGATTTGCATATGCCGGAATCAGGTTTCCCTTTGAAATTTTGTTTAGTTTTCGGTGTGGAAGATATCACTATGATATCACAGGGAGACTTCCCATGCTCTGCTGCTTGCTGTTTATTTTGCTGCGCTTTGCTGTCCTTCTTGGCATCCAAGTCCGAAAGAAGTGGTTTTCTTATTCCAGCTGTGGCACTTGTAGAGCAACAGTTTCTGAACTTGATGAAGACAGTCTTCTCGATGGAAGAACAGAAATTGAACACGTGAGCAGGCTTCTAAATTTGGAACAAAACAAGACTTCTTCAGATGTGAAAGGGTTGAAGAAAATCTTGCACTACATCTACCAACCAAGATCAGATTTCAAATTCTCTACTCAATTTCTGTCAACTTTACTCGTCGCTGGAATTGCACTCTTTGAGGTTGCAGTTGCACTTATAATTGTGACTAGAACCTACAAAAAATGCTATCGCCTACGTTGTTACAGTGATCAGGATTGTGAGAAGTTATTGGATGCTGTATGTGGAAGCATCAGGGCAGCCTGCGTTTTGTGTTTCTTCATGTGTGCAATATTACTCCTGCATTTCATGAAGTGTCATCGAGATCATGTGCTCCAGCGGTATCGTGGGAAAAGATTTTACCAAGATGTGGCTCTTTCTCCCAGAGAGCTAGTCGGCCACAGCCTTTGCTTCTCGGGATACCAGATTGCCTATGCGGTAATAGGATATTTGACCTTGTTTACTCCAATGCTCCTTATTAGCGTTATCTCTGGACTCATAGTCCATTTCAAATTGGACCAGCGGATCTTGGCGGAATTGAAACAAATCTTGCTTGCAGCTTTGCCTACATTGGTTTTAAGTGTCGTCATGTTCCTGTTCCAGCTATTACTGAAATCCTTCGTCTTCCGTGACAGAAATTTTCCAAACATCACGATAACTGTGGCTAACAGGAGGCTGTTTTCCATAGCTTCGTACTTCTATTTCTTCAACAATATCATTGCTGGACTTATTATGGGGGTTTTTCGCCTTCTTAAAGTTTTGCTGCTGGGAATTGTTTTCATGTCACGGATTGATCGAACATGTTTAATGCAGGGATATCGAAGCTGGGACCAAGCCCTTGTAGCGTACGTGGGATTTCTCAACGTCTCAGTTGCCCACAGCCATCCTGTCATGCTCGTGTTTTGCCATTTGCTGATCAACAGAAACAGTGACCGCGGGCTCGAAGAGTCTTCAGAAGGCGCGTGTTCAGAAGTCACGTCTTCGAAAGCCACGGGGGAAGATCTCGAAGGAATCGGTCATCAGCGCTGCGTGGCTCGTTTTTCCCAAAGAGCGGCAAATCGCTGGCTGTTGGCGGTCATGCTGCTTCGTAACCCTTCCCTCCTCAGGTATCGCCGGCAGGGTTGCGTGACACGCTTTGCGGATATGGGGAGTAAACGTATCAACACTATTGTGACAATTCGCATTTAGTTAAGCTCTCTTGAACTCTGCAACTTCCAATACGTGCGTGTGATATTGTCGTACTATTACACTAAATTTTGTGTGGCGTGACGTTGCTTTAGCCTTAGTCATTTCATAGTTCACCCTCTTTGAGATTTCCTACGCGTTTTGGAAATGTCATTCAGATAAGAGCAGGAGATTCAATGTGTCAACAATTTTGTTCAAGTCAGTGGATATATATTACGGTCTGAAAGACCTGTCTCGTATGTTAATGCATGTCAATTAGGGCCAATTAGGCTGATGATTATGAGTCTTTTTTTTAGGGATAGTGGTGTTAGTGCGGTGTCGGGAAGAATTTATGAGACTGAGAGCGTTTTAGTAGTGATAGCGTTGTAGTAGTGTTTGGTTTACTTTCTGAAGAAACTGTGGTGCTGGGT

Protein

Uniprot

Uniprot term	Description
F1RAX4	Receptor for retinol uptake stra6 OS=Danio rerio OX=7955 GN=stra6 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14752	RBP_receptor	Retinol binding protein receptor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026612	Family	Receptor for retinol uptake STRA6-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21444	COILED-COIL DOMAIN-CONTAINING PROTEIN 180	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0071939	Biological Process	vitamin A import into cell	Interproscan
GO:0034632	Molecular Function	retinol transmembrane transporter activity	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23088	STRA6; vitamin A receptor/transporter (stra6) family protein	-	Transporters	ko02000	deepkoala