Gene detail

Detailed information of aacu_s0085.g36.t1 in Acropora acuminata

Genomic Location: sc0000085_pilon:384886...396190
NR annotation: XP_044172941.1, nuclear migration protein nudC-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0085.g36.t1

AGAGTTGGCGACATTTTGCGAAGCCTCACAGCTTCTTGAATTGTTCGTTTAACTTCAGTATGACCGACACAAATTCAGAGAAATTTGATGCCATGCTGCTGGCAATTGCTCAGCAGTGCGACGGAATTACAGAGTTGCTGGACGTGTTCTTCGGATTTCTGCAAAGAAAAACAGACTTCTTTACTGGAGCTGGTAAAACTGAGGCAGAGAAAATTGTAATCACCAAGTTTAGGGAGCATCAGAAAAAAGTTGAAGAGAAAAAGGAGAAAGAAAGAAAAGAAGCTGAAGCTTTAAAAGCAGCCAAAGCCAAAAGAGAAGCTGAGAAAGAAGCTGAGCCAAAGATTCAGGAGGTTACagatgaagaggcggaaagaataaaaaaagaagaggaaatgaagaaacaaaaagctgaagaGATGGCTGAGAAAAGTACAAATGATACTGATTCAGAAGACAAAAAGAATGAAGAGCCTAAGAAGGGGGAAGGTTCCGATGATGAGGAAGATGAAGATGCAAAGGGAAAAATGAAACCAAATTCAGGAAATGGAGCTGATCTTCCTACCTACAAATGGATACAGACGCTCTCTGAAGTTGAGGTGAGAGTTCCATTGAATGCCAGATTCAGAGTGAAAGGACGTGACGTTGTGGTGGATATACAGCAAGCTCATTTGAAGGTTGGTCTAAAGGGACATCCTCCTATTGTTGATGGAGATCTCCCGAAGAAGGTGAAAGTTGAAGAGTGCTCGTGGGTCTTACAAGATGGAAAGGATGTGGTTATCTCTCTTGAAAAAGTAAATAAAATGGAGTGGTGGTCACAATTGGTAATCACAGATCCAGAAATAAACACGAAAAAGGTTCAACCGGAGAACTCCAAGCTTGGCGATTTGGATGATGAAACAAGAGGGATGGTGGAAAAAATGATGTTTGATCAAAGACAAAAAGCTATGGGATTGCCAACATCAGATGAACAGAAGAAACAAGATGTCCTTAAAAAGTTTATGGAACAGCATCCCGAGATGGACTTCTCTAAAGCTAAATTCTCCTAACAGAACGGACTCGAATTTGAGCCCAGCACAAGAGCGAATCGACAGAAACTGCTTGTAAATGTCAGAAACCTTCATTTCACAACTTTCTTTCCTTTACAACCAATACTGGAGCGATAGCTTGTACGATAGTTAAAAATTGCTGAATGAGGACGAAAATGATTTGTACTGAGATGGAGCAGAGAATAATTTTAGTAGTGTTACGAAAGTGGAAGAGAATTCCTGGTTTTGAGTCACGTGACTAACGGTGCCAATCACAATAATAGATCAGCTGCCATAGAGCTTGTTTGGAACGCCCTGGCGTCTCGAACAACCGGGAATTGTGGTTGTTTTATTCGTATAATTGTACGTTGTCTTTTTAGCTGATCGTTCACAACAATTTACGTCACTAATTCTGGTCTTTTGTTTGTGATCGGTTTACCTGTTTCATTTCACGAACTTTGTTTTTTATGGACTTAGTTGGAATTATGCAGAACAAACTGGTGTTTGCTATATTATCGCGGGCTAACGTGCGCTAGAGACATTCGGTGTTCGTCACTGACGATTTAGCACACGCACAATGTGTTGATGTTTACAGGAGACAAGATGTTTACAGGAGACAAGATTTTCACCATGTCAAGATGTTTACAGGAGACAAGATTTCATCATAACGCTTAGTAAGCGTTATGGTAAAATCTTGTCTCCTGTCGGATTATTCTCAGTGAATGTTTCTTTTCGAAAGAAATCCGAAGCCAAACCGCGGGCCCTATCAGCTGTGGATGCATATTTGTATTGCCAACATTACACCTGCTCGATTTTCTTAATGTTAAAAGCATGCTAAAGCTTATTCAAACTCGGTAATTAAAGAGACAAGACTAAATGAAAGTGAATACACTTAAAAAGAAAGTCCTCTGAAACTCACTCTTCATCACTAAGAGAAGGCGTGATTGTACAAGGCGGATACCTCTTCCGCTTGATTTAGATCTATGGTTTTGAGAATCCTGTCAtttttttttttttttttgctgttttCGCCTTGAGCTCAACGAAAAACTTAAGTCAATTAAAAGCCTTTTACGGTTCATTTAAATTGGGTTTCGAGGGTGCTCAAGTAGGAAATTTAAATTAGCCCTCAACTCGTTTATGGCAGTGAAAGATGAGAACGGAAAGGTCTAAAAGTGGTAGTTTTAGAAAATGGAAAAGCGCGCTGTGAAATACCCTCACAAAAAAGGTGCAAATAAAGTTCCAATGTTTTG

Protein

Uniprot

Uniprot term	Description
Q5ZIN1	Nuclear migration protein nudC OS=Gallus gallus OX=9031 GN=NUDC PE=2 SV=1
O35685	Nuclear migration protein nudC OS=Mus musculus OX=10090 GN=Nudc PE=1 SV=1
Q17QG2	Nuclear migration protein nudC OS=Bos taurus OX=9913 GN=NUDC PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04969	CS	CS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007052	Domain	CS domain	Interproscan
IPR008978	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR037898	Family	NudC family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25866	NUDC; nuclear migration protein NudC	-	Chromosome and associated proteins	ko03036	deepkoala