Gene detail

Detailed information of aacu_s0089.g14.t1 in Acropora acuminata

Genomic Location: sc0000089_pilon:182956...205834
NR annotation: XP_029186003.1, myocyte-specific enhancer factor 2A-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0089.g14.t1

TTCGGATCAATTTTCTTTCACAAATTCATTTGACGGTCGCCCCTTGATGCAGTAAAGGCAGACTCTTTGGCACGTCAGATCATTTTAAGCACCTTTTACATCCAAGCTTAAAAAGATCTAACGGATCCCAGACTTCGATCAAACGAAGTTCACTTAAAAACTGGCTGAAAGCCCCCCATTAAACCTTGAGTTGAGCGCCGTGAGCCCAAGACCACAGTACAGAATGGGAAGAAAGAAGATTCAGATTTCAAGAATCGGGGACGAGAGGAATCGCCAGGTTACTTTTACCAAACGTAAATTTGGACTAATGAAGAAAGCGTATGAGCTGAGTATCTTATGCGACTGTGAGATCGCACTGATCATTTTCAACTCCAGTACCAAGTTGTTTCAATATGCCAGCACAGATATGGACAAGATTCTACTCAGGTACACAGAGTATAATGAACCACACGAGAGCAGGACAAATGCTGACATTGTTGAGGCAATTTCAAAGAAGGAGAATAAGGCATTGCCGTCTCCAGATGACACAGAAAAGCACTTCGTGTTAACACCACGGACGGAGGAAAAGTACAATAAAATAAACCAGGAATTTGACCAGATGATGAAAAAGAACCTGCTTCATCCGCAGCAAACATCAACAAGCAGTGACAATTTCCAGACCCTTCCGGTCTCCGTGCCAGTATCATCAAATAACATATCAGAAGATGGCTATGCAAGTCAACCTGGAACCACTGACAGTGGTGTTATGATGAGCTCTGGGATGCCAGTCACGTCAGGTGGGAGAATCACCGGCGAACACATGAATGGGAGCTACTCACGAGTAAATACCCCTGGCATAACAGGAAATACACAAAACATGTCAGACCTTGTTGCTGCCGCTGGATTAAACCGAAGTGTCACTCCTGGACCCATTCAGAGAAATGATGGTTCTTTTGTTACAGCCTCGCCTGGTGTAACAAGCAGTGGACGAAATTCTGTTTCTCCTCATCCGCAAGCAGTGACTCCACCACCTAACAGGCCACCCCTGAAGATCAACATTCCCTCGAGAACTCCTTCAGGGCAGATGCATTCTAATCGGCATGCGATGGCAGTAGCAACATCTCATGAAAATCAGCCTCTGTCTACTCCGGTGATTTCCCTGAACTCTTTCCCTATGCAAACACCAGGTGATAATCAGTCACTGTCAACACCTATACTTTCTATGGCAACGCCCAACCTGGCATCAGCTGCACCACCGTCATTTGCCTCTGCTTTACCTTCTGGGCTGCCACCAGAGTTTCCTTTGGAAAACTCAGAGGCACTTGCCCAGAAATTGGCACAATTTCCAGGAGCATTGTCAGTCATTCAACAGCAAGCTATTCTTCAGCAACAGCTGAATATGCTACAAGCTGGGAATGTACCAGTTACCAATTTACTGGGAAGCCGTCTCACCGTGCCAAATGCATCTGTAGTTCAGGGTATGTCATCAGTGAACATCAAAGCGGAGCCAGGTGAAAGAGATTCCACCTCGCCAAATTCACACTCCTCGATTTCCCCAACTTCACCGTATCAAGTCCAGCGGCGTTTGACTCCAAACAGGGATGATCCACGCGAGCTGGACAAAGATGGCACTCATAAGCGGCCACGCCTTGATGGCAGCATTCATGCAGCGTATGGTTTGCGTTAAGTAGAAAGGTTAATGGTAGTGTATTTAGCTTCTGCTTCATGGAACACAAGTTATGTGTATTAGTTTTAGTGACTTTTCATGTAACACTGAGCCAGCATTACATAATGAGTCAGCTGGTGAATGTTTCGTTAAAATAATTAAGATTATTTGAAATGCTTAAATAAGTTCACAGTGGAGAAAATCTCATTATTTAAAAGTTTCTTTAAATAATGTTTGTTAAAATGGATTGTTGCGTTTGTGATGCTGGCATCATATCTGTTGAGCACCAAGGCTATTCGAAAGTTTGCACTCATTTCTTGTCAGAATTAACTGCCTTACGGTAACAAAATCTTGCTTTATGTTTCTGCAGACGAAGGATGCAAATTTTATTGACGTTACGCAGTAAAACGTTTTTTTAGTGAATTTTTCTTTCACAGCCGTGCTGTAACCACTGATTATTTTTCAAGACGTTAAGAGAGAAACTTTTTTTTTGCAGAATATTCAATAATTCAACGCAAACCTCAATATTTTACGATACTCAGGGTGTCTTACTTACTAATTGGTTTTACAAAGCACTCTTTCTAAACAGCCTTGGAATATCTAGCTTTAATAATTTGTTGCATGCATTCTTTTATATTTTTTTGtaaatagtaattaattgataaatcaatacaaaatcaataattaattacattTCTCTGCTGAAGAAATAAAACTACTTTAAAGTTGCCGAAGAGTAACTTGAAGATAGTGAAAACATGCTATTTTAGAAATGTGTAGAGTTAGGTAGGAAGTGTACAGCTGTGATACAGATCGAATGTTGTGCCTTCGTTGGATTACGCCCGGTTGTCATGCCAATAAATTTGGTACCACCTTCTCGACTAGTGAAAACCAAAACAGTTGGTGGCGATTTGCGCTTGCATGATTCGTTCTCTGATTGGTTTATCATCTTATCACAGTATGTTCTTATTGGCTAGAGTAGCTGCTCTATTGTGAAAAAAATCATCCCGTCTAGTGAGAACTGTTTCTGCATTGATATCAGGCCTGTAGTGTTCATAGAGAGACGAGCGCAGTATATTCTACGATGGAATTATCTATAATTATATCCGGTATGTAAATTTTCTTAACCCGTGAAAATAAGCTCCTGAAGAGTGTTTGATCGCATTATAAATATACACGGACTTTGAAACTTAACACCTCAAAGGTTATACCCCCTTTGTCTTAATTGTGACTCGTCACTTCAAGTGTGATTTGTGGTTTACTGTAAGATTGAAATGAAGTCATCGCAACTGGAATGAAACTGTTTTATTTTCGTCCTTGTTTATCATGTTTTACTTAACGTAGTTTTGTTTTGCAGTGGTGGTTAATATTTTGTAGAGAAAACGTTTATAATGTTCTTTTGTACGAACTTGCTTTTCAATGAAATGATGTGTAATTTATAGGTCGAACACTTTCATTAGGAAGTCTGTTAATTCATAATTATAATTATGTAGAGTAACTTGGCTCATTTAGTTGTTCAGTGTTCTGTAGTATTTCTTTATCGATTTTTTACACATTTCTTTTTTTTGCTACCACATTCAGTAGGGCCGGTCCCTGGGACAAGAAAGTTTGGATTTTTATCAGAACTTTAAAATAGTACATAATCGTAGTAGTTTTGATAATCTTCGAGTTTTCGTAGGTATAGTTTGTAGTAGATAAAAATTTTATCTCGAAGCTTTCAAGAAATTGAAATATTTCTTGGTTTTAGCTCCTCTTTCTTAAGATTAGGGCAGTATTCCCTGTAGCATAGGTCAAGCTTTTCCTCTCATGGGAACTCGCTGATAGTTTCATGGAAGTATAACTTTATTCGAGGAGCGAGTACTATGTTAAATTTATTTTATATATTCTTCGTACGTTGCAACAGATTAAACACTACAACGACGAATGCAGTGTGGCGGCCTTGATTATTGACCATTTTCGCTTCCTAAGCGTGTATGTGCTTGTAAATAAAGAGCACTTCAATTG

Protein

Uniprot

Gene family

Uniprot term	Description
Q2MJT0	Myocyte-specific enhancer factor 2A OS=Rattus norvegicus OX=10116 GN=Mef2a PE=1 SV=1
A4UTP7	Myocyte-specific enhancer factor 2C OS=Sus scrofa OX=9823 GN=MEF2C PE=2 SV=1
A2VDZ3	Myocyte-specific enhancer factor 2A OS=Bos taurus OX=9913 GN=MEF2A PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	SRF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12347	HJURP_C	Holliday junction regulator protein family C-terminal repeat	Domain	Interproscan
PF00319	SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036879	Homologous_superfamily	Transcription factor, MADS-box superfamily	Interproscan
IPR002100	Domain	Transcription factor, MADS-box	Interproscan
IPR033896	Domain	MADS MEF2-like	Interproscan
IPR022102	Domain	Holliday junction regulator protein family C-terminal	Interproscan
IPR050142	Family	MADS-box/MEF2 Transcription Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09260	MEF2A; MADS-box transcription enhancer factor 2A	-	Transcription factors	ko03000	deepkoala