Gene detail

Detailed information of aacu_s0107.g5.t1 in Acropora acuminata

Genomic Location: sc0000107_pilon:149876...161735
NR annotation: CAH3030832.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0107.g5.t1

CTCAAGTGTTGCCATGGTAAAGGCCAGACGAGAATCAGTTCCTGCAAATACACAAAGACCAAAATCACCGTTGGGAAAAACACAGTCACTGCCAATGGCAACAGAGgacagcaaaaatgatggaacagccttgaatggtgcccagtcttctgctccaccacgatctgagtcaaactctcagtcaaAGAAAACGTCAACCCCAGGCCCTCTGGAGTTTGCAACCCAGATTCCTTTGCAAGCAAGGTATGCTAGGTGCAAACTGGAACTAAGGCACTTAGTGTATCACAAAAGGGATCATAATGCTGCAGATATGAAGGAGAAAGCTCTTCTTGGAAGTGTTCTTGCTGAGGGAAATGAACCCATCCAGCCACGGTTTCATCCCAAAGGAATCTTAGTGGCTCATCTTCATGAGCACAAAGCTGCCATTAACCGGATTCAAGTGAGCTCTGATTATTCGCTCCTTGCATCTGCCTCAGATGATGGTTCAGTGAAGCTGTGGGATCTGCAGAAGCTTGATGGGCGAAGTTTGATAAACAAATCGCGGCAAACACATAGCAGACCAGATTGGAAGATGAAAGCATTGGTTTTCTGCCAAGGTTCAAGTTCTATTGCTTTTGCCTCAGATGAGGGGCGCATTGATGTTGTTAGAATAGAGCACAGCAGTCAGCAAATTTCAAATCGAAATGTGCTGTATTTGAAGAAAGTTGACCCTAAAGAAGAAGGACTGGTGGTTGACATGGCTCAGTTTGAAACAGGTTCTCAGTCCATTTTGACCTATGCTACCTCTCACGGCCTTATTTGTGGCTTGGATCTGCGATCTTCACAGTTGGCCTGGAAACTTGAAAATGAGCCATCACATGGGGTGATAACAACATTTGCAGTGGATCCTTGTCATAGCTGGCTAACCGTGGGCACAAGCTCTGGAATGATAGTCTGCTGGGACCTGAGATTTCAGCTTCCCATAACAAATCTCTCTCATCCAAGAGGTGCTCAGGTTCGACGCCTTTCCACCCACCCAACTGAGCAGTCCTGGATTGTGTCTGCTGTCCAGGGCAATAATGAAGTGACTGTGTGGGACCTAGAAACTGGTTCAAGGAGGCAGGCATTGTGGGCAAGCCACACCCCACCCCTGTCACAAACACAGGTCTCCCCTTATGCCGTCCATGCACTTTGCACAAGTAGACCAGACACCAGTCCTTATATTCTGACCGCAGGCTCAGACCGCCGAATTCGCTTATGGGACCTGGCCTATCCTGAACATTCACAAATGGTTATGGGAGCAGCCACAGATGTTCAGCGAAATTTTGTTCTACAATACAAGTCACGCCTCATTGATGGAACTGATGTCCTGCAAGAGGTGTTTTGCAATTCACGTCAGGGTAGTGTACATGAAGATCTCCCTCGGCGAGGACCTGAGCACCCCCCTGTGGGGCATCATGAATGCATTAATGACATTGCATTTACTAAATTACCACAAAATTACATCATATCGGCTGCCAGAGACGGAGTGATCAAGATATGGAAATGAGAAGGTTCCAAACATTTTCAGAAAGCTACACTGAGACACTCACCCAATTGTCACTCTGAGAGGTTAAACTAGAATGTCCACAGGTCTTTCTGTGTGGATTCTCCCTTTCTCTAAAGTGAACAATACAGTTCATATAATTTTATTATTCATCCTAGATTCATTTAGTAAACATTCTATATTTAGTATAATAATAATTATTGTAATTTAATTGTGTAGATATTGGAGATGGTCCTCTTATTGACTTAAAACGTATAATTCTTACATGTTTCAAATTTATTTGTGTTTCGGGAAGAGGTTCAACTTGCGTATTCCTCATAACAGTGTATACTCTTTCTTGTGCTAAAATTGAAGGGAGTAGTGACTTTGTGAGACAACTTTCAAGTGCACAACATTAACCCTAGGCTACAAGTCGTTGCTAATaatagacctttttacaggttagtgcctagttacccggcctttgaatgaaagtgaggttggaggtgaccttgttatgatatagaaacctcacttatttttttatgtaaattcatactaattagcatgagaacagcgttattaacataaaaaaagcagggaggtttctatcaaagcaaggtcacctccagcctcactttcattcagaggccaggtaactaagctcacaactgtaaaatggtccatCGACAAAGCGTTGATAAATATGATCCTCCTAGTTATGCCCACTCAGGGATATTTCACCCCAGTCACTTTTTGATCTTAAAGACTATTAGTCTTGTAGTCTACACAAATCTTTAAGTGAGATCTTTTCAACTCCTTTTACAGAGAGCCTTTAAACTAAAGGACTTTGTATTCTTTATAAATTTTGTGTAGTGAGTTACTTAATAAGTTGTTTGGAATATATGCAGAAACCACTTGCATAAAAGAGCAAGTTATAATGATCAACAATTTTCAGGCTGAGAATTGATTAAGCACTGTACTCATAAGAACGAAAGATCAAGAGAAGAAACACTGTAATAGATTCTTATGCAAAAAAGATTGGGGCATCCAAATGATTAGAAAAAGTTTCAAATAATGTATGCATCATCATTTATGCAATTATTAAAAGATAGACGGGCTATGTGGCTGGTAGTAATCTGTACTATACCATACCTTATTTCTTAAAGAAATTTTATTCTAAGAGAACCGCATAAGAACAGCAAGAGGCTGATGACTCACTAAGGCACCACATAAAAAataggaaacataccagggtccagttgttcaaagcctgatcaagctaatcctggattagtagaaattttaattgtagttatttatttacctttcaaggagggtttaaacaagattataaggtttaaggaaaacaaatttgcaatttataacctcattgggccacaactttgcagcaaattcctcctttagcggtaaataaagagcaattaaaatttacgctaatctaggattagcttaatcaggctttgaacgactgggcccagagccttaattgacccaAAAATCATAGGTTCTTTTATGCAGGTTATAGCCTGTATTTCAATCATTTCAGGTCATCTATTCACCTCTACTGACATGAATGTACCAAATTGCTTATCTTACATCAAGCTCAAAGCAAGATGACAGAAATACAAATGAGAAAAAATGTACGATATTATTATACCTCAGGATAATAAATGAGAGTGTTTGAC

Protein

Uniprot

Gene family

Uniprot term	Description
Q99570	Phosphoinositide 3-kinase regulatory subunit 4 OS=Homo sapiens OX=9606 GN=PIK3R4 PE=1 SV=3
Q5R9I3	Phosphoinositide 3-kinase regulatory subunit 4 OS=Pongo abelii OX=9601 GN=PIK3R4 PE=2 SV=3
Q8VD65	Phosphoinositide 3-kinase regulatory subunit 4 OS=Mus musculus OX=10090 GN=Pik3r4 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR045162	Family	Serine/threonine-protein kinase Vps15-like	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17583	PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0006623	Biological Process	protein targeting to vacuole	Interproscan
GO:0016236	Biological Process	macroautophagy	Interproscan
GO:0030242	Biological Process	autophagy of peroxisome	Interproscan
GO:0034271	Cellular Component	phosphatidylinositol 3-kinase complex, class III, type I	Interproscan
GO:0034272	Cellular Component	phosphatidylinositol 3-kinase complex, class III, type II	Interproscan
GO:0045324	Biological Process	late endosome to vacuole transport	Interproscan
GO:0071561	Cellular Component	nucleus-vacuole junction	Interproscan