Gene detail

Detailed information of aacu_s0120.g25.t1 in Acropora acuminata

Genomic Location: sc0000120_pilon:568648...590304
NR annotation: XP_015750597.1, PREDICTED: uncharacterized protein LOC107330491 isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

aacu_s0120.g25.t1

ATGTGGAAGGGAAACGTTTGCTCCGCTGTTGTGCTGCTGTTAATGTTTGCTACCCAGGCTGCGGTTTCACAGAGACAAAGCTTAAAGTTTGAGGACGAGTCCTTAACAGGTAGTCGTCGTACCCTAAGCGCTACAGCGCAAGCGTTTTTCGCCGGCTTGATGGCTCCCCAGAACCTGCCAAATAGTGCATTGGCAACTTCAATTGTTGTAGAGCAGAAATTAAGACAGACTGGAAACACGGTGTATTTTGTTACACTATTTGATAAGACCAGAACCATCCCTTTGTATTCGGCCTACAAGGTGACCCCAAGTCAGGGGAAAGCTATTGGATCGCATAAAAGAAAGGAGGTGTCAGGCAATTGGAGGACTGCTCCCGGAGTTACTGGTCTAGATAATGCTTACAAAGCGGCAATCAGGATTTGTAAGGCAAAGACCGGACGCCCTCAGCTCAGCCGAGGTCATATGAATCCTTCAGCCATAAATTCGTTTGATTTAAATCACATGAAAGCTACATACACTTTGTCAAACGCGGTACCACAGTTCCAGAAGTTTAACAGCCAGCAATGGGGGACCCAAGAAGAAAAAATACGCAATTACGCCAAAAATACATGTGCAAACGGTGGTGGAACCCTTTATATGCTGACGGGGATATCAGATATTGGCCTGAGAATACCATCAGGTGGCGGAAATCCTGTACAAGACACCACCATTACGCAGAAATGTCCTGAATACATATTTACAAGTGGCGGTACTAGTCATAAGCTGGGTACTCCTCGCGCGGTTTGGTCAGCAGGGTGTTGCGTGTGGCCGACAACAACAACACCTGTGCCGCCGGCAAAAAAACCGAGACGGCAACCAGTCACATCGTTTGCAATCATGAGTAACAACCACCCCGATCAAAGTCAGCTGCACCTCAAGCAGATGAGTGTCGCAGACCTGGAAACGCTTCTTACTCCCTCAGGAGCGTCGAATGTTCATAaaaaagaagaagaagaagaaTATTGCATTGTTTCTGGTTTTGGGCGAAATGATGCCATTAAATATTTTAAGCTTCAGGGCATGTTTAATGGATTTACAACAAGGCATGACCCGTGGTGGATTATACGCTTGTCACGTCATTCTATACGCTTGTCAAAGCAAATTATTGCAGCAGACGATGAGTCCTTAACAGGTAGTCGCCGTACCCTAAGCGCTTCAGCGCAAGCGTTTTTCGCCGGCTTGATGGCTCCCCAGAACTTGCCAAATAGCGCATTGACAACTTCAGTTGATGTAGAGCAGAAATTAGGACATACTGGAAACACAGTGTATTTTGTTACACTATTTGATGAGACCAGAACCATCCCTTTGTATTCGGCCTACAAGGTGACCCCAAGTCAAGGGAAAGCTATTGGAAGGCATAAAAGAAATGAGGTGTCAGGCAATTGGAGGACTGCTCCCGGAGTTACTGGTTTAAATAATGCTTACAAAGCGGCAATCAGGATTTGTAAGGCAAAGAAAGGAAGCCCTCAGCTCAGCCGAGGTCATATGAATCCTTCAGCCATAAATTCGTTTGATTTGAATCACATGAAAGCTACATACACCTTGTCAAACGCAGTACCACAGTTCCAGAAGTTTAACAGCAAGCAATGGGGGACCCAAGAAGAAAAAATACGCAATTACGCCAAAAATACATGTGCAAACGGTGGCGGAACCCTTTACATGCTGACGGGGATATCAGATATTGGCCTGAAAATACCATCAGGTGGCGGAAATCCTGTACAAGACACCTCCATTCTGCAGAGATGTCCTCAATACACATTTACAGGTGGCACTAAGAGTCATACACTGGGTACTCCTCGCGCGGTTTGGTCAGCAGGGTGTTGCGTGTGGCCGAAACCAGCAACACCTGTGCCTCCGACAAAAAAACCGAAACGGTTTCCAGTCACATCGTTTGCAGTCATGAGTAACAACCATCCCGATGAAAAACAGCTGCACATCAAGCAGATGAGTGTCGCGGACTTGGAAACGCTCCTTACTCCCACAGCAGCGTTGAAAGTAAACTTGTTTCCAGGCAACAGTGATTGTAGATTGTCCAAATATAACCATATGCTCTAA

Transcript

aacu_s0120.g25.t1

CACTATGTTATAAGCTGGAAAAAAATACAAAATTTTACCATTTGAGGCAAGCCTTTAACAAGTTAACAGAATGTGGAAGGGAAACGTTTGCTCCGCTGTTGTGCTGCTGTTAATGTTTGCTACCCAGGCTGCGGTTTCACAGAGACAAAGCTTAAAGTTTGAGGACGAGTCCTTAACAGGTAGTCGTCGTACCCTAAGCGCTACAGCGCAAGCGTTTTTCGCCGGCTTGATGGCTCCCCAGAACCTGCCAAATAGTGCATTGGCAACTTCAATTGTTGTAGAGCAGAAATTAAGACAGACTGGAAACACGGTGTATTTTGTTACACTATTTGATAAGACCAGAACCATCCCTTTGTATTCGGCCTACAAGGTGACCCCAAGTCAGGGGAAAGCTATTGGATCGCATAAAAGAAAGGAGGTGTCAGGCAATTGGAGGACTGCTCCCGGAGTTACTGGTCTAGATAATGCTTACAAAGCGGCAATCAGGATTTGTAAGGCAAAGACCGGACGCCCTCAGCTCAGCCGAGGTCATATGAATCCTTCAGCCATAAATTCGTTTGATTTAAATCACATGAAAGCTACATACACTTTGTCAAACGCGGTACCACAGTTCCAGAAGTTTAACAGCCAGCAATGGGGGACCCAAGAAGAAAAAATACGCAATTACGCCAAAAATACATGTGCAAACGGTGGTGGAACCCTTTATATGCTGACGGGGATATCAGATATTGGCCTGAGAATACCATCAGGTGGCGGAAATCCTGTACAAGACACCACCATTACGCAGAAATGTCCTGAATACATATTTACAAGTGGCGGTACTAGTCATAAGCTGGGTACTCCTCGCGCGGTTTGGTCAGCAGGGTGTTGCGTGTGGCCGACAACAACAACACCTGTGCCGCCGGCAAAAAAACCGAGACGGCAACCAGTCACATCGTTTGCAATCATGAGTAACAACCACCCCGATCAAAGTCAGCTGCACCTCAAGCAGATGAGTGTCGCAGACCTGGAAACGCTTCTTACTCCCTCAGGAGCGTCGAATGTTCATAaaaaagaagaagaagaagaaTATTGCATTGTTTCTGGTTTTGGGCGAAATGATGCCATTAAATATTTTAAGCTTCAGGGCATGTTTAATGGATTTACAACAAGGCATGACCCGTGGTGGATTATACGCTTGTCACGTCATTCTATACGCTTGTCAAAGCAAATTATTGCAGCAGACGATGAGTCCTTAACAGGTAGTCGCCGTACCCTAAGCGCTTCAGCGCAAGCGTTTTTCGCCGGCTTGATGGCTCCCCAGAACTTGCCAAATAGCGCATTGACAACTTCAGTTGATGTAGAGCAGAAATTAGGACATACTGGAAACACAGTGTATTTTGTTACACTATTTGATGAGACCAGAACCATCCCTTTGTATTCGGCCTACAAGGTGACCCCAAGTCAAGGGAAAGCTATTGGAAGGCATAAAAGAAATGAGGTGTCAGGCAATTGGAGGACTGCTCCCGGAGTTACTGGTTTAAATAATGCTTACAAAGCGGCAATCAGGATTTGTAAGGCAAAGAAAGGAAGCCCTCAGCTCAGCCGAGGTCATATGAATCCTTCAGCCATAAATTCGTTTGATTTGAATCACATGAAAGCTACATACACCTTGTCAAACGCAGTACCACAGTTCCAGAAGTTTAACAGCAAGCAATGGGGGACCCAAGAAGAAAAAATACGCAATTACGCCAAAAATACATGTGCAAACGGTGGCGGAACCCTTTACATGCTGACGGGGATATCAGATATTGGCCTGAAAATACCATCAGGTGGCGGAAATCCTGTACAAGACACCTCCATTCTGCAGAGATGTCCTCAATACACATTTACAGGTGGCACTAAGAGTCATACACTGGGTACTCCTCGCGCGGTTTGGTCAGCAGGGTGTTGCGTGTGGCCGAAACCAGCAACACCTGTGCCTCCGACAAAAAAACCGAAACGGTTTCCAGTCACATCGTTTGCAGTCATGAGTAACAACCATCCCGATGAAAAACAGCTGCACATCAAGCAGATGAGTGTCGCGGACTTGGAAACGCTCCTTACTCCCACAGCAGCGTTGAAAGTAAACTTGTTTCCAGGCAACAGTGATTGTAGATTGTCCAAATATAACCATATGCTCTAACTCCACAAGGGGATAAATTCGTAAGGCGTGCGTACGCTAAAATTTCGACGCGTTTAAAAATGAATATTAAGTTAACATTTGTCCTCTCAAGTAAGAGCAGTTATTGCTGGATATGATGAAATGTAATTAGCGACTGCATGAAGCTAATAAAATTACATTTTAACT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01223	Endonuclease_NS	DNA/RNA non-specific endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039015	Family	Endonuclease domain-containing 1 protein	Interproscan
IPR001604	Domain	DNA/RNA non-specific endonuclease	Interproscan
IPR044929	Homologous_superfamily	DNA/RNA non-specific endonuclease superfamily	Interproscan
IPR020821	Domain	Extracellular Endonuclease, subunit A	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21472	ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19220	cwlS; peptidoglycan DL-endopeptidase CwlS	EC:3.4.-.-	Peptidoglycan biosynthesis and degradation proteins	ko01011	deepkoala