Genomic Location: sc0000141_pilon:36049...70205
NR annotation: XP_044174895.1, TNF receptor-associated factor 6-like [Acropora millepora]
Species Acropora acuminata · all data for this species · gene families
| CDS |
| aacu_s0141.g2.t1 |
| Transcript |
| aacu_s0141.g2.t1 |
| Protein |
| aacu_s0141.g2.t1 |
| UniProt accession | Description |
|---|---|
| B5DF45 | TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=1 |
| B6CJY4 | TNF receptor-associated factor 6 OS=Cercocebus atys OX=9531 GN=TRAF6 PE=2 SV=1 |
| B6CJY5 | TNF receptor-associated factor 6 OS=Macaca mulatta OX=9544 GN=TRAF6 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000780 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21355 all species → | TRAF-mep_MATH | TRAF/meprin, MATH domain | Domain | Interproscan |
| PF13976 all species → | gag_pre-integrs | GAG-pre-integrase domain | Domain | Interproscan |
| PF02176 all species → | zf-TRAF | TRAF-type zinc finger | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036875 all species → | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR001878 all species → | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR049342 all species → | Domain | TRAF1-6/MEP1A/B-like, MATH domain | Interproscan |
| IPR025724 all species → | Domain | GAG-pre-integrase domain | Interproscan |
| IPR001293 all species → | Domain | Zinc finger, TRAF-type | Interproscan |
| IPR008974 all species → | Homologous_superfamily | TRAF-like | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR002083 all species → | Domain | MATH/TRAF domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10131 all species → | TNF RECEPTOR ASSOCIATED FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0031663 all species → | Biological Process | lipopolysaccharide-mediated signaling pathway | Interproscan |
| GO:0032813 all species → | Molecular Function | tumor necrosis factor receptor superfamily binding | Interproscan |
| GO:0033209 all species → | Biological Process | tumor necrosis factor-mediated signaling pathway | Interproscan |
| GO:0045087 all species → | Biological Process | innate immune response | Interproscan |
| GO:0051092 all species → | Biological Process | positive regulation of NF-kappaB transcription factor activity | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0070534 all species → | Biological Process | protein K63-linked ubiquitination | Interproscan |
aacu_s0141.g2.t1.Genes whose expression across the transcriptome samples of Acropora acuminata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora acuminata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
